Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00238 ATGAATGGCGCTACAGCAACAGATTCTGAAGCAGACAACTCTGAATATGTCGAAGTCGATCCCACCGGGAGATATGGAAGATACAATGATGTTCTTGGCAAAGGAGCATCCAAGACAGTTTACAGAGCTTTCGATGAATACGATGGCATTGAAGTGGCATGGAATCAAGTGAAGCTCTGTGATTTCCTTCAAACCCCTGAAGATCTCGAGAGGCTATACAGAGAAATCCATTTATTGAAGACGCTAAAACATAAGAACATAATGAAATTCTGTTCTTCCTGGGTCGACACTGCCAATAGAAACATTAACTTCGTTACAGAGATGTTCACATCCGGGACACTCAGACAATACAGGCTGAAGCACAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAAAGGGCTTCATTATCTTCATAGCCATGATCCTCCTGTAATCCACAGAGATCTTAAATGTGATAATATTTTTGTCAATGGGAATCAAGGGGAAGTCAAGATCGGTGATCTTGGACTTGCTGCTGTTCTTCGTAAATCCCATGCCGTTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAACTGGTTGATATCTATTCTTTTGGAATGTGTATCCTTGAGATGGTTACTTTTGAATATCCATACAGTGAATGCACTCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAGCCTGATGCTTTGTATAAGGTGAAGGATCTCGAGGTTCGGGTTTTCGTCGAGAAATGCTTGGCTACTGTGTCGACTAGGCTGTCTGCTAGAGAGCTTTTGAATGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTACTCACGCCAATAGATTACTATTCTGAATATGATGAAGTGAATAATGGTCTGGATTACTGTCTGATTGATAACGAAGTGAGCGAAATCGATCTTTTTTCGTGTCAAGACGACGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGCGATGACGATATATTTCTACGGCTTCGGATTGCGGATAAAGAAGGTCGAATACGAAACATCTACTTCCCGTTCGATTTAGAGAATGATAGTGCTTTAAGTGTTGCAAATGAGATGGTTTCTGAGCTTGATATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATAATGAGATAGATACATTGGTGCCAGAATGGAAGAGAGGAACAAACTCTGATGCTAATGTTTGTCACAATTGTGCTTTAAACGGTTCACTTTTGGATTACGTTTCACCGAACCATCCGACGACGAAGAACCTACACGTTCTTCAGTGTTCTGAGGAGCATGGCTGTGCTTCTATCCATGGACGTTTTGAGGAGATTACATACCAAGTTGAGGGGTCGGAACAATTCAATGGTTCATCGGAGAATCCGAGCGATATCCATTATGCCGATATTTGGGCGCAGCGAGATGGCAATGAATCACATGGAGGAGCATCAGAACAGCTGAAGCTCAAGAAGGAAGAAAGTAGTGTACATAAGAACAATAATGATCATCAAACAGAATTCCAAATGAGAAACTCGAGCTCATCGAATCGTTTGGTGTCGTTTGCCGATGATCTCGAGAACGAGATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAATTAGGAGTCAAGGTCAAATCTTTCAGCTTACAGCCGAATCCGAACCTTCCCAAGACTGACTGTGGAGCTTTCGTATCGTTGCTTTCACCAAATATCAATGAAGCAGCAGCAAAACATAAGGCTGGTATCACTTCACATTCCCCCCATGTTGCTGCTGATAACGTATTGGAAAATCGAACCTTTCATGACGACAGCTTTGATGTCGACGAGTCGGGTAGTCCCGAGCTGATGATTACGGCCAAGAGCTTCTATGCAGGGACATTGTTACCTCATTCTCTACAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG 2037 41.97 MNGATATDSEADNSEYVEVDPTGRYGRYNDVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFCSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAVLRKSHAVRCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRVFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLTPIDYYSEYDEVNNGLDYCLIDNEVSEIDLFSCQDDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDNEIDTLVPEWKRGTNSDANVCHNCALNGSLLDYVSPNHPTTKNLHVLQCSEEHGCASIHGRFEEITYQVEGSEQFNGSSENPSDIHYADIWAQRDGNESHGGASEQLKLKKEESSVHKNNNDHQTEFQMRNSSSSNRLVSFADDLENEIRQELRWLKAKYQMQLRELRDQQLGVKVKSFSLQPNPNLPKTDCGAFVSLLSPNINEAAAKHKAGITSHSPHVAADNVLENRTFHDDSFDVDESGSPELMITAKSFYAGTLLPHSLQRATSLPVDAIDF 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1210638 1213864 - CmaCh17G002380.1 Cma17g00238 312133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00238 678 MobiDBLite consensus disorder prediction 505 525 - -
Cma17g00238 678 MobiDBLite consensus disorder prediction 496 533 - -
Cma17g00238 678 Gene3D Phosphorylase Kinase; domain 1 9 107 - -
Cma17g00238 678 Gene3D - 347 429 - -
Cma17g00238 678 Pfam Protein kinase domain 30 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00238 678 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Cma17g00238 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 296 - -
Cma17g00238 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 313 667 - -
Cma17g00238 678 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00238 678 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 349 404 IPR024678 GO:0004674|GO:0005524
Cma17g00238 678 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Cma17g00238 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 313 667 - -
Cma17g00238 678 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 1 296 - -
Cma17g00238 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Cma17g00238 678 SMART serkin_6 26 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00238 678 Coils Coil 551 571 - -
Cma17g00238 678 CDD STKc_WNK 24 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00297 Cma-Chr3:3865243 Cma17g00238 Cma-Chr17:1210638 1.63E-157 dispersed
Cma05g01185 Cma-Chr5:9186004 Cma17g00238 Cma-Chr17:1210638 0 dispersed
Cma08g01145 Cma-Chr8:7059926 Cma17g00238 Cma-Chr17:1210638 2.44E-64 dispersed
Cma11g01005 Cma-Chr11:5426778 Cma17g00238 Cma-Chr17:1210638 0 dispersed
Cma12g01107 Cma-Chr12:8766135 Cma17g00238 Cma-Chr17:1210638 0 dispersed
Cma13g00858 Cma-Chr13:7061331 Cma17g00238 Cma-Chr17:1210638 0 dispersed
Cma17g00238 Cma-Chr17:1210638 Cma18g00193 Cma-Chr18:1004778 2.92E-171 dispersed
Cma17g00238 Cma-Chr17:1210638 Cma08g01144 Cma-Chr8:7057164 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69222 PF00069 Pkinase 8.20E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00238 K08867 - csv:101210511 1140.56