Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00239 ATGTCAAAATTTAGCCACTTCAAACTCATTCTCTTCTTCCTACCGCTCCTAATTTCCCTCCTGTCCACAGCCGCCGCCCCGGCCGGCCGCCGTCACCCTCTGGACCCACTCTCACCGGACGAAATCGAACTCATACGATCACTTGTCATCAACTCTATTCGCAACCTCTCCACCACCAACGTCACGTTCCAATACGTCGCCCCCGCCGATCCCAACAAGCAATCTGTACTCTTATGGCACTCAAACCCCAAAACCCCGTCGCCACCTCGACGCGCCACCGCCATCGTCCGTTACAACAGTTCCACACACGAGATCCTCATAGACCTGGACAAAAAAGCTATAATCTCGGACCGGGTCTACTCCGGTCCAGCTTACTCTGTGTTCACATTGAGTGAGCTGTTAGACGCCGTCGCTCTTCCGCAGTCCCACCCACCGTTCGTGGCGGCGATGAAAAAGAGAAAGCTGAAAGTGAAAGATGTAATTTGCGCGTGTTATAGCGTTGGGTGGTTTGGGGAAAAAATGAAGCAAAGGAGGATGGTAAAGCTTCAATGTTATTATTCGAATGGGAGTGTCAATTTGTACATGAGGCCGGTGGAAGGCGTGACCATGACCGTCAATCTCGATGAGATGAAAATTATTGGGTTTCGAGATCGATACGAGGCTCCGGTGCCGAAGGCCGATGGAACTGAATACAGACCATCTATGCTCAAGCCGCCATTTTTGCCACCTTTGAACGGAGTTAAGATGGTGCAGCCGGAAGGACCCAGCTTCAAAGTCAACGGTCACTCAATTAGTTGGTCAAACTGGGAATTACACGTAGGATTCGACAAGAGAGCAGGGTCAATCATATCGCTAGCATCAATCTACGACATCGAAAAGCAAAAGCGCCGACAAGTACTGTACAAAGGTTTCATATCGGAGCTGTTTGTACCCTACATGGATTTAACCGAAGAATGGTACTACCGAACATTTTTCGATGCCGGCGAGTACGGCTTGGGGCAGTATGCAGCGTCATTAGAGCCGCTCAGAGACTGCCCAGAAAATGCAGTGTTTATGGACACGTACATAGCTGCCGGAGATGGGAGGCCGATGAAGATGGCCAACACTTTCTGTATATTCGAACGCCACGCCGGTGATATCATGTGGCGTCACACCGAGCGCGCCATTTCAAATAGAATTATTAGAGAGACGAGGGCGGAAGTGAGCTTGGTGGTGAGGATGGTGGCTACCGTGGCTAATTATGACTATGTTTTGGACTGGGAATTTAAGCAGAGCGGCTCCATTATTGCTACTGTGGGGTTGACGGGTTTGCTGGCAGTGAAGGCATCAAAGTACACTCACAGAGACCAGATAAAGGAGGAAGTGTACGGCACGTTGATATCCGAGAATACGATTGGCGCCAACCATGACCACTTCTTCACCTACTATCTCGATCTCGACGTCGACGGCGGCTCCAACTCGTTCGTTAAATCCAACCTGCGCACTGTCCGACCACCGAATACCGATAATCCTAGGAAGAGCTATTGGACGGTGGTCTCCGAGACGGCGAAAACAGAGGCGGATGCGAGGATCAAATTTGGGCGTCAAGAGGCGGAGCTGGTGGTTGTTAATCCTAATCGGAGGACCAGAATGGGGAATCCCGTCGGGTACCGTTTGATTCCGAAGTCGACGGCGGGTCCCCTTCTGAGTGTTGACGATTACCCCCAAATTAGGGCAGCGTTCACGAATTACAATGTGTGGGTTACACCGTATAATATCTCTGAGAAATGGGCCTCTGGACTCTACACAGATCAGAGCCGTGGAAATGATACCTTGGCTACTTGGAGTCTCAGGAACAGGGAGATAGAGAATAAGGACATAGTGATGTGGTACACTCTAGGAGTTCATCATGCACCTTGCCAAGAAGATTTCCCATTAATGCCAACGCTTAGCAGTGGGTTTGAGCTGAGACCGACCAATTTCTTCGAGAGCAATCCTGTGCTTAAAGTCACCCCTCCCCGCCCGCTCAACCGCTCCGTTTGCGCTCACTGA 2031 50.71 MSKFSHFKLILFFLPLLISLLSTAAAPAGRRHPLDPLSPDEIELIRSLVINSIRNLSTTNVTFQYVAPADPNKQSVLLWHSNPKTPSPPRRATAIVRYNSSTHEILIDLDKKAIISDRVYSGPAYSVFTLSELLDAVALPQSHPPFVAAMKKRKLKVKDVICACYSVGWFGEKMKQRRMVKLQCYYSNGSVNLYMRPVEGVTMTVNLDEMKIIGFRDRYEAPVPKADGTEYRPSMLKPPFLPPLNGVKMVQPEGPSFKVNGHSISWSNWELHVGFDKRAGSIISLASIYDIEKQKRRQVLYKGFISELFVPYMDLTEEWYYRTFFDAGEYGLGQYAASLEPLRDCPENAVFMDTYIAAGDGRPMKMANTFCIFERHAGDIMWRHTERAISNRIIRETRAEVSLVVRMVATVANYDYVLDWEFKQSGSIIATVGLTGLLAVKASKYTHRDQIKEEVYGTLISENTIGANHDHFFTYYLDLDVDGGSNSFVKSNLRTVRPPNTDNPRKSYWTVVSETAKTEADARIKFGRQEAELVVVNPNRRTRMGNPVGYRLIPKSTAGPLLSVDDYPQIRAAFTNYNVWVTPYNISEKWASGLYTDQSRGNDTLATWSLRNREIENKDIVMWYTLGVHHAPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVTPPRPLNRSVCAH 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1218191 1221879 + CmaCh17G002390.1 Cma17g00239 312134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00239 676 Pfam Copper amine oxidase, N3 domain 128 219 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 SUPERFAMILY Amine oxidase catalytic domain 235 666 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 ProSitePatterns Copper amine oxidase topaquinone signature. 403 416 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 Gene3D - 127 220 - -
Cma17g00239 676 Gene3D Copper amine oxidase, catalytic domain 257 671 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 SUPERFAMILY Amine oxidase N-terminal region 125 232 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 Gene3D - 30 126 - -
Cma17g00239 676 SUPERFAMILY Amine oxidase N-terminal region 31 122 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 Pfam Copper amine oxidase, enzyme domain 248 661 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 PANTHER AMINE OXIDASE 16 668 - -
Cma17g00239 676 Pfam Copper amine oxidase, N2 domain 32 119 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00239 676 PANTHER COPPER AMINE OXIDASE 16 668 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00239 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101210998 1062.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01145 Cma17g00239 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00100 Cma-Chr10:406293 Cma17g00239 Cma-Chr17:1218191 1.94E-86 dispersed
Cma11g00072 Cma-Chr11:355752 Cma17g00239 Cma-Chr17:1218191 2.28E-87 dispersed
Cma17g00239 Cma-Chr17:1218191 Cma17g00241 Cma-Chr17:1226862 0 dispersed
Cma17g00239 Cma-Chr17:1218191 Cma17g00240 Cma-Chr17:1222505 0 tandem
Cma02g01501 Cma-Chr2:8575801 Cma17g00239 Cma-Chr17:1218191 0 transposed
Cma17g00239 Cma-Chr17:1218191 Cma08g01145 Cma-Chr8:7059926 4.35E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00239 Cma_Chr17 FPKM 0.0 0.0 0.0 0.0 26.887903 27.97401 24.177296 0.0 0.0 0.0