Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00240 ATGGCAAAGTGTAACCCCACAAAACGCTCTCTCTTCTTCCTCCCACTCCTCATTTCCCTCCTCTCCGCCGCCGCCGCCGTCCGCCGTCACCCTCTGGACCCACTCTCACCGAACGAATTGGATCTCATCCGGTCACTCATCGCCGACTCCCTCCCCAACCCCTCCACCACCAACGTCACCTTCCAATACGTTGCCCTCGCCGATCCCAACAAGCAATCTGTACTCTCATGGCACTCAAACCCCAAAACCCCGCCGCCACCCCGACGCGCCACCGCCACCGTCCGTTACAACAGTACCACACACGAGATCCTCATAGACCTGGGCAAAAAAGCTATAATCTCGAACCGGGTCTACTCCGGTCCAGCCTACGCGCCGTTTACAATCGAGGAGCAGTTCGCCGCCGCCGCTCTTCCGCCGTCCCACCCACCGTTCGTGGCGGCGATGAAAAAAAGAGGGCTGAAAATGGAAGAGGTGGTTTGCGCGTGTTTTAGCGTTGGATGGTTCGGGGAAAAGAGGAAGCAAAAGAGGACGGTGAAGGTTCAGTGTTACTATTTGGATGGGAGTGTGAATTTGTACATGAGGCCGGTGGAAGGCGTGACGGTAACCGTCGATCTCGATCAGATGAAGATTATTGGGTTTCGAGATAGATATGAGGCTCCAATTCCGAAGGCCGATGGAACCGATTACAGAGAATCGATGCTCAAGCCGCCATTTTTGCCTCCTTTGAACGGAATAAAGATGGTGCAGCCGGGAGGCCCCAGCTTTAGAGTCAACGGCCACTCCATTAGTTGGTCAAACTGGAAATTACACGTGGGCTTCGACGAGAGAGCTGGACCAATCATATCGCTAGCATCAATCTACGACATGGAAAAGCAAAAGCACCGACAAGTACTGTACAAAGGTTTCATATCGGAGCTGTTCGTACCCTACATGGATTTAACCGAAGAATGGTACTACCGAACGTTTTTCGACTCCGGCGAGTACGGCTTCGGGCAGTGCGCAGTGGCGTTAGAGCCACTCAGAGACTGCCCGGAAAACGCAGTGTTTATGGACACGCACATGGCGGCCGGAGATGGGAGGCCGGTAAAGATGCCCAACACGTTCTGTATCTTTGAACGCCACGCCGGTGATATCATGTGGCGCCACACGGAGGGCACCATTCCCAATAGAGTTGTCAGAGAGACGAGGCCGGAAGTTAGCTTGGTGGTGAGGATGGTGGCGGCTGTCGGCAACTATGATTATATTGTCGATTGGGAATTTAAGCAGAGTGGCTCCATTATTGCAAACGTCGGGTTAACGGGTTTGCTGGAAGTAAGGGCATCAAAATACACTCACAGTGACCAAATAAAGGAGGAAGTCTACGGCGCGTTGATATCGGAGAATACGATCGGCGTCCGCCATGACCACTTCCTCATCTACCATCTCGATCTCGACATCGTTGGCGGCCCCAACTCCTTCGTCAAATCCAACCTCCGCACAGTCCGACCACCGACCCCCGATTCCCCTAGGAAGAGCTATTGGACGGTCGTCTCCGAGACGGCCAGAACAGAGGCCGATGCGAGGATCAAATTCGGCAGTCAAGCGGCGGAGTTGGCGGTCGTTAATCCCAATCGGAAGTCCAGATTGGGGAATCCCGTCGGGTACCGTCTGATTCCGAACTCGGCGGTGGGTCCCCTTATGAGTGCTGACGATTACCCCCAAATTAGGGCAGCGTTCACGAATTACAATGTGTGGGTTACACCGTATAATAGCTCTGAGAAATGGGCCTCTGGGCTCTACACAGATCAGAGCCGTGGAGATGATACCTTGGCTACTTGGAGTCTAAGGAACAGGGAGATAGAGGAGAAGGACATAGTGATGTGGTACACCATGGGGTTTCATCATGTGCCTTGTCAAGAAGATTTCCCATTAATGCCTACGCTGAGCCGTGGGTTTGAGTTGAGGCCGACCAATTTTTTCGAGAGCAATCCTGTTCTCAAAGCCACCCCTCCCTACCCACTCAACCGCTCCATTTGCCCTCTCTGA 2025 53.58 MAKCNPTKRSLFFLPLLISLLSAAAAVRRHPLDPLSPNELDLIRSLIADSLPNPSTTNVTFQYVALADPNKQSVLSWHSNPKTPPPPRRATATVRYNSTTHEILIDLGKKAIISNRVYSGPAYAPFTIEEQFAAAALPPSHPPFVAAMKKRGLKMEEVVCACFSVGWFGEKRKQKRTVKVQCYYLDGSVNLYMRPVEGVTVTVDLDQMKIIGFRDRYEAPIPKADGTDYRESMLKPPFLPPLNGIKMVQPGGPSFRVNGHSISWSNWKLHVGFDERAGPIISLASIYDMEKQKHRQVLYKGFISELFVPYMDLTEEWYYRTFFDSGEYGFGQCAVALEPLRDCPENAVFMDTHMAAGDGRPVKMPNTFCIFERHAGDIMWRHTEGTIPNRVVRETRPEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHSDQIKEEVYGALISENTIGVRHDHFLIYHLDLDIVGGPNSFVKSNLRTVRPPTPDSPRKSYWTVVSETARTEADARIKFGSQAAELAVVNPNRKSRLGNPVGYRLIPNSAVGPLMSADDYPQIRAAFTNYNVWVTPYNSSEKWASGLYTDQSRGDDTLATWSLRNREIEEKDIVMWYTMGFHHVPCQEDFPLMPTLSRGFELRPTNFFESNPVLKATPPYPLNRSICPL 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1222505 1226844 + CmaCh17G002400.1 Cma17g00240 312135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00240 674 Pfam Copper amine oxidase, enzyme domain 245 659 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 PANTHER AMINE OXIDASE 16 669 - -
Cma17g00240 674 Gene3D - 28 124 - -
Cma17g00240 674 SUPERFAMILY Amine oxidase catalytic domain 233 665 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 Pfam Copper amine oxidase, N2 domain 30 117 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 ProSitePatterns Copper amine oxidase copper-binding site signature. 623 636 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 PANTHER COPPER AMINE OXIDASE 16 669 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 Gene3D Copper amine oxidase, catalytic domain 255 666 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 SUPERFAMILY Amine oxidase N-terminal region 29 120 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 Gene3D - 126 218 - -
Cma17g00240 674 SUPERFAMILY Amine oxidase N-terminal region 122 230 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00240 674 Pfam Copper amine oxidase, N3 domain 125 217 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00240 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101210998 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01501 Cma-Chr2:8575801 Cma17g00240 Cma-Chr17:1222505 0 dispersed
Cma17g00239 Cma-Chr17:1218191 Cma17g00240 Cma-Chr17:1222505 0 tandem
Cma17g00240 Cma-Chr17:1222505 Cma17g00241 Cma-Chr17:1226862 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00240 Cma_Chr17 FPKM 3.138877 4.296557 1.147452 1.561787 1.645893 1.119947 1.686855 0.966941 0.89166 0.841065