Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00241 ATGGCTCTTCCTCTGTTGCTTCTTCTTGTCCTTCACCTTCATTTCTCCACGGCGGCGCCACCACCCCATTTCCATCCCCTCGACCCTTTAAACCCAGCGGAGCTCGACCAAATAAGGCTCATTATCCAAAAATCCCACCTGGGAAACCTTCAAAATCTCACATTTCACTTCGTTGACTTGGAGGAACCAGAGAAGAAACATGTTCTTTCCTGGCTCTCCTCCGGTCAACAAAACAGCCACACCCACCTCCACCCCCCGCCGCGTCAAGCCAAGGTTGTGGTTCGTGCGGCGGATTCCACCCACGAACTACTTGTAGACCTTGCCACACGATCGGTCAAATCCGACCATGTCTATAACGGCCATGGATATCCTCCTTTCACTTTTCTTGAGCTCTTCCAAGCTAGTAAATTACCTCTTAATTACCCAAAATTCAAAGCTTCTATTCATAGGAGAGGCTTGAATTTGTCTCATGTTTCTTGCCTCCCATTTACAGTCGGCTGGTACGGCGAGAAAACGACCAAAAGGCTTCTAAAAGCTGCGTGTTTTTACAGAGAAGGAACCAGCAATGTCTTCTCCCGGCCAATTGAAGGCATAATTACACTAATCGAAGTCGATTCGATGAAAATCATCGACTATTCCGACAGATTCACCGCCCCTTTACCGGAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCGCAAATCCACCAATCCCAACTCGACAAACACCCATTTCACCGTCGAAGGCCATCGAGTAAAATGGGAAAATTGGGTCTTCCACGTGGGATTCAACGCCAGAGCCGGAGTTATTATCTCGACAGCCTCCATTTTCGACGACGAGAAGAAGAAATTCCGACGAGTGCTTTACAGAGGACATATTTCAGAGACGTTTGTGCCGTATATGGATCCAACAAATGAATGGTACTTCAGAACCTTCATGGATATCGGAGAGTTTGGATTTGGGCGGTCGGCGGACACTCTGCAGCCGCTGATTGACTGCCCGGAATCCGCCGAGTATCTCGACGGATACATGGCCGGCGCCGACGGGCGAGCGCAGAAGGTAACCAGAGCAATTTGTATCTTCGAACGCCAATCAGGGGACGTTTTATGGAGACACACAGAGATCAATATTCCTGGAAAAGTGATTAGACGAGGGGAGGCGGAGAGGAGCTTGGTGGTTAGAATGGTGGCAAATGTTGGGAATTATGACTATGTTCTTGACTGGGAATTCAAAAGGAGTGGCTCTATTAAAATTGGGATAGCTTTAACGGGGCTTTTGGAGGTGAAAGCCACAGCGTACAGAAACAACGTAGATATAACGGAAGAAATATACGGAACTCTGATCGCCGCCAACACGGTGGCCATCAACCACGACCACTTCCTAACCTACTACCTTGACCTCGACGTTGACGGCACCGACAACTCCTTCGTCAAAGCCAAGTTGACTACGGAAGTACCGACAACGAAGGTCAACGCCACGTCACCCCGAAAAAGTTACTGGAAAATTAACAGAGAGACCATCAAAACGGAAACTGAAGCCAAGCTTCAGCTGAGCTCTGATGTCCCAGCCGAGCTCTTGTTTGTAAACCCCAATAAGAAGACGAAGATTGGAAATCCGGTTGGCTACCGGCTCATCACCGGACAACCGGTTAATTCCTTACTAGCCGACGATGACTACCCTCAAATCAGAGCAGCTTACACCAAGTACCCATTATGGGTGACTCCTTATAACAAGTCGGAGAGATGGCCGGTCGGGTTTTACGCCGATCGGAGCCGTGGTGATGATGGCTTAGCTGTTTGGGCCAAAAGGAATAGGAGGATTGAGAATAGAGATATTGTTGTATGGTACACGGTAGGGTTCCATCACAGCCCTTGTCAAGAGGAGTTTCCGGCGATGACGGCTCTCCATGGCGCATGTTCACGCGCATCGTTATCCAAGCGCGTGTACCTTGCGCCTTTCCCTACATATTCCACTCGTATTCCCTCCCCTCTGCGCTCCCTCTGCTTCTCTCTTGCTTCTTCTGAACTCTCTGTTTTTCTCTGTTTTACTCTGTTTCGCCTCCATTTTCAGCCATGGCTTCTTCTTTGGATTGCCTCCTTTTCGGTAGCTTATTTGGATGACACTCTGTACTCTTTCAGCACTGGAATTGCAGCTGCTTGCAAGAAAAACATCGAAGATTTTCTCATCGAGAAATTTGGATTCCCGAAAACCCAAGCTCCGATTCTCCGGACAGAGCTTTTTAAAACATACGGCAGCACTCTGGCTGGTTTGCGAGCATTGGGATATGACATTCATGCCGATGATTACCATGATTTCGTGCACGGGAGGCTGCCGTACGACCGGATAAAACAGGACTTTCAGCTCCGGCGTCTCTTGCTGACCATTCCGCAAAGAAAAATTATATTCACGAATTCCGACATGAAGCATGCGACCGAAGTGCTCGGTCGATTGGGCTTAGAGGGTTGTTTCGAGAAGATCATATGTTTCGAGACCATGAATCCAAATCTTCCGACGGCGACTCGGCCGAACGAGTTTCCGGTCGTTCTCAAGCCGTCGATGGACGCCATGAGAATCGCACTAGACGCCGCCGACATTGACCCCTGTCGTACGCTGTTTCTCGACGACAGCGTCCGCAACATCGCCGCCGGAAAAGCCATCGGCCTCCGTACCGTTCTGGTGGGAAAATCATCCAAGAGCAAGGAGGCGGATTATGCAGTGGAGACGGTGCATAATTTGGCACAAGTAGTTCCAGAGATACGGGTGACTATAGAATCAAACAATGGCAATGAAATGATGAATCGGAGTCGGAGCGAAGTTGATTTGGTTCTCATGGCAACAACTGTCGGTGCTTAG 2859 49.11 MALPLLLLLVLHLHFSTAAPPPHFHPLDPLNPAELDQIRLIIQKSHLGNLQNLTFHFVDLEEPEKKHVLSWLSSGQQNSHTHLHPPPRQAKVVVRAADSTHELLVDLATRSVKSDHVYNGHGYPPFTFLELFQASKLPLNYPKFKASIHRRGLNLSHVSCLPFTVGWYGEKTTKRLLKAACFYREGTSNVFSRPIEGIITLIEVDSMKIIDYSDRFTAPLPESEGTDYQSKKTERKSTNPNSTNTHFTVEGHRVKWENWVFHVGFNARAGVIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRSADTLQPLIDCPESAEYLDGYMAGADGRAQKVTRAICIFERQSGDVLWRHTEINIPGKVIRRGEAERSLVVRMVANVGNYDYVLDWEFKRSGSIKIGIALTGLLEVKATAYRNNVDITEEIYGTLIAANTVAINHDHFLTYYLDLDVDGTDNSFVKAKLTTEVPTTKVNATSPRKSYWKINRETIKTETEAKLQLSSDVPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPVGFYADRSRGDDGLAVWAKRNRRIENRDIVVWYTVGFHHSPCQEEFPAMTALHGACSRASLSKRVYLAPFPTYSTRIPSPLRSLCFSLASSELSVFLCFTLFRLHFQPWLLLWIASFSVAYLDDTLYSFSTGIAAACKKNIEDFLIEKFGFPKTQAPILRTELFKTYGSTLAGLRALGYDIHADDYHDFVHGRLPYDRIKQDFQLRRLLLTIPQRKIIFTNSDMKHATEVLGRLGLEGCFEKIICFETMNPNLPTATRPNEFPVVLKPSMDAMRIALDAADIDPCRTLFLDDSVRNIAAGKAIGLRTVLVGKSSKSKEADYAVETVHNLAQVVPEIRVTIESNNGNEMMNRSRSEVDLVLMATTVGA 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1226862 1234334 + CmaCh17G002410.1 Cma17g00241 312136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00241 952 Gene3D Copper amine oxidase, catalytic domain 247 659 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 Pfam Copper amine oxidase, enzyme domain 245 637 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 SUPERFAMILY HAD-like 707 917 IPR036412 -
Cma17g00241 952 Gene3D - 698 784 - -
Cma17g00241 952 Gene3D - 790 928 IPR023214 -
Cma17g00241 952 Gene3D - 126 218 - -
Cma17g00241 952 PANTHER COPPER AMINE OXIDASE 6 640 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 PANTHER PRIMARY AMINE OXIDASE 1 6 640 - -
Cma17g00241 952 SUPERFAMILY Amine oxidase N-terminal region 23 121 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 Pfam Copper amine oxidase, N2 domain 25 116 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 SUPERFAMILY Amine oxidase N-terminal region 122 228 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 707 895 IPR010237 -
Cma17g00241 952 MobiDBLite consensus disorder prediction 220 246 - -
Cma17g00241 952 Gene3D - 24 124 - -
Cma17g00241 952 Pfam Copper amine oxidase, N3 domain 124 217 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 SUPERFAMILY Amine oxidase catalytic domain 245 637 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cma17g00241 952 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 850 895 IPR006439 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00241 K00276 AOC3, AOC2, tynA; primary-amine oxidase [EC:1.4.3.21] - csv:101222232 1099.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01146 Cma-Chr8:7070223 Cma17g00241 Cma-Chr17:1226862 1.31E-13 dispersed
Cma13g00116 Cma-Chr13:787956 Cma17g00241 Cma-Chr17:1226862 9.74E-68 dispersed
Cma14g00141 Cma-Chr14:576395 Cma17g00241 Cma-Chr17:1226862 1.83E-71 dispersed
Cma17g00239 Cma-Chr17:1218191 Cma17g00241 Cma-Chr17:1226862 0 dispersed
Cma17g00240 Cma-Chr17:1222505 Cma17g00241 Cma-Chr17:1226862 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g478 . . Bda03g00891 . Bpe04g00835 . Bma04g00789 . Cmo08g01123 Cmo17g00228 . . . . . . . . . . . . . . Cla06g00575 Cam06g0614 Cec06g0615 Cco06g0621 Clacu06g0601 Cmu06g0594 Cre06g1362 Cone14ag0844 . . . . . . . . . . . . . . . . . . . Cma17g00241 Car08g01029 Car17g00218 Cpe12g00202 Cpe17g00144 Bhi12g01720 . . . . . . . . . . . . . Lsi09g01328 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00241 Cma_Chr17 FPKM 25.089087 27.472368 38.111332 37.228096 3.138747 2.584228 2.836598 3.272515 2.446907 2.680599