Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00244 ATGGGGACTGTTGAAGAAGCAGCTTCCATTACTTCTCATGATTCTGAAGTATCCATTTCAGAGCTACGTAGAAAGCAGAAGGAAGAACTTGAAAATTTGACATTGGTGACTCAACCATTCAAAACATTGAAGTTTTTCATTTTGGGTGTTCTTCAATATAGCAAACACTCGATTGCATACATTTTAGCGAAAGGTGGTTGGTTTTTGCTCTTACACTTGATTATTGGGGTAGCTGGAATTTTGATTTTGACTATCGAAGGGCCACATGAGAAGCATGTTGAGGAGATTGTGAAATACTTTGACTACGGCTTGTGGTGGGTGATCCTTGGAGTTGCATCATCAATTGGTCTTGGGTCTGGTCTGCATACTTTTGTCCTTTATCTTGGGCCTCACATTGGGTTTTTCACAATAAAGGCGGTGCAGTGTGGTCGAGTGGACTTGAAGAGTGCCACTTATGACACAATACAATTGAAAAGAGGCCCATCGTGGCTCGAGAAGGATTGTTCAGAATTTGGACCTGCAGTTTTCACATCACGAGTCCCACTCAGCAGCATATTGCCAATGGTTCAGATAGAGGCAATTCTGTGGGGTATTGGGACCGCCCTAGGAGAGCTTCCTCCTTATTTTATCTCAAGGGCAGCTCGCCTCTCCGGTGGCAGATCAGAAGCAATGGAAGAACTAGATGCCTCTTCGAGGGAAACTAATGGATTCATTCCAACATACTTAAATAGAGTGAAGCGATGGTTCCTTTCACACGCTCAACATTTGAATTTCCTTACTATTCTACTGCTTGCTTCGGTTCCAAATCCACTGTTTGACTTGGCGGGCATTATGTGTGGACAATTCGGGATTCCTTTCTGGGAATTCTTTTTCGCTACGCTGGTCGGAAAAGCAATTATCAAAACTCACATCCAGACCATTTTCATCATTGCCGTTTGCAACAATCAACTTCTTGATTGGATAGAAAACGAACTAATATGGATACTCAGCTTCGTGCCTGGATTTTCATCGGTCTTGCCCGAGCTCATTTCCAAGCTCAATGCAATCAAAGCTAAGTATCTGAAAGCGCCATCTCATGCGGCCACTAATGTCAAGGCCAAATGGGATTTCTCAGTTTCATCCATCTGGAACACTATAGTATGGCTCATGATCATGAACTTCTTTGTCAAGATTATGACTTCAACTGCCCAAAGGTACTTGAAGCAACAGCAAGATGAGGAGCTGACTGCGTTGACGAACAAAGTTCCTGCATTGGCATGCTCGAATTAA 1269 43.18 MGTVEEAASITSHDSEVSISELRRKQKEELENLTLVTQPFKTLKFFILGVLQYSKHSIAYILAKGGWFLLLHLIIGVAGILILTIEGPHEKHVEEIVKYFDYGLWWVILGVASSIGLGSGLHTFVLYLGPHIGFFTIKAVQCGRVDLKSATYDTIQLKRGPSWLEKDCSEFGPAVFTSRVPLSSILPMVQIEAILWGIGTALGELPPYFISRAARLSGGRSEAMEELDASSRETNGFIPTYLNRVKRWFLSHAQHLNFLTILLLASVPNPLFDLAGIMCGQFGIPFWEFFFATLVGKAIIKTHIQTIFIIAVCNNQLLDWIENELIWILSFVPGFSSVLPELISKLNAIKAKYLKAPSHAATNVKAKWDFSVSSIWNTIVWLMIMNFFVKIMTSTAQRYLKQQQDEELTALTNKVPALACSN 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1239972 1245561 + CmaCh17G002440.1 Cma17g00244 312139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00244 422 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 1 421 - -
Cma17g00244 422 PANTHER VACUOLE MEMBRANE PROTEIN KMS1-LIKE 1 421 - -
Cma17g00244 422 Pfam SNARE associated Golgi protein 198 299 IPR032816 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00244 K21248 VMP1; vacuole membrane protein 1 - csv:101215273 781.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01148 Cma17g00244 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00244 Cma-Chr17:1239972 Cma08g01148 Cma-Chr8:7081493 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g475 Blo01g00127 Blo12g00325 Bda03g00892 Bda08g00234 Bpe04g00836 Bpe14g01180 Bma04g00790 Bma05g01111 Cmo08g01125 Cmo17g00230 . . . . . . . . . . . . . . Cla06g00573 Cam06g0612 Cec06g0613 Cco06g0619 Clacu06g0599 Cmu06g0592 Cre06g1359 Cone14ag0843 Cone15ag0830 . Cone4ag0233 . . . . Blo02g00547 . . Bda13g00132 Bpe05g00905 . Bma02g00856 . Sed09g0767 . . Cma08g01148 Cma17g00244 Car08g01030 Car17g00219 Cpe12g00203 Cpe17g00143 Bhi12g01722 Tan06g2530 Cmetu05g1070 Lac12g2295 Hepe03g0188 . Lcy13g0271 . . . . . . . Lsi09g01330 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003598 4 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 3 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00244 Cma_Chr17 FPKM 19.72732 22.747101 14.824401 16.634289 14.067365 16.245338 15.92719 12.455356 13.04376 13.944808