Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00246 ATGGATAGGAACAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCCTCCAACGGGCTCTCTAGACGGAGATACAGGACTAGTAGTCTTCGTGACTCTCCAGAGGATGATGGACAGTTGGAGTTACAGGATACCGTAAGATTAAGAGATCGAGGTAGCGGGAAGAAAGATCGAGATCGAGATAGGGATAGAGACAGAGATCGAGACCGTGAAAGAGATCGGCTAAGTAGGAGCAAGAGGAGGAGAGCCGATAGATTGATTCATGGTGGTAGCAATAGGGAAGATGGAGGTGAAGATAGTTCTGAGGAGAGTGTAAATGACGAAGAGGATGAAGAAGACGACGATGGCGGCGGCGGTGGTGGTGGTGGTGGTGGAGCGTCTGTCAGAATGCTTCCGCCAAATCCGGCGGCGATTTTGAGCCATCGGAAGACTTTTCCACCGGCGAAGAGTTTCAGAGCAGCACCATCGTGGAAAGCAGCCGATGAAATGATTGGTGTGTCGGTGCCGAGAAAAGCCCGGTCAGCCTCGACGAAGCGGTCTCATGAATGTTGGCCAGCAGCGACGGGCGGCGGAACGGTTATAGAGGCCATTAACCAGCAGGCTTCAACATCGCCAGTGAGGCCAAGTCTTACAGCAATGGGGGCGACGTTTCAGCCTCCAGCCTCGCCTTCTTCTTCCAATGCTCCGGTGAGGAAGAAGCTGAAGCAAACCGGACCTAAACTCCGGCCGCTCAAATCCTCCTCAAAACCATCATCCACGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTCTTGTACGGTATGATGAGACAGCCTCAAGGTCCTCCAAAACAAGAACCCTCTACTACTGATACCATGAAGTTCGATTCCAAATCAACCACCGATGCCAAATCCAGAGTTTCATCGCCGATTTCCAACTCTTCTGATTTGCCTACCCCTTCCATTTTGCCTCAAAATTCCAGTTCTTCTGTCACTCCGATATCAACCACAGCACCCAAGAGGAAAAGACCGCGTCCTGTGAAGTACGACGACGAGAACACCGCCACCTTCAGCCTTCGGAATAGCCCCATTTCATCAAGAGCCAAAGCTGAGGCCGATCAGCCGCCTACCAACGCCGAGATCCCTTCATCAAATGTGGAAAAAGTTTCAGGATCTGCAGGTGAAAATGTAGTTTCAAATGAATCTGCTAATTCTCTGGCTTTACCGGAGTCCCGTCCAGAATCTATGAAGGTGGACACAACCAGTGCCATGCCCAATTCCAAGCCATTGACTGAAGAATCAGTCGGCAAAGATTTGGGTTCTAGCAAGGAAGAACCCCAATCTCCCCTGAAGGAATCAAATGGCCCTAGATTAGAAGATAAGCGAGAGGATATGACAGCGACCAAATCAAATTCATCAACATTCGATGCTGAGAACCAGGGGGATGATAAGTACAAGATAGATCTAATGGCTCCTCCACCATTACGAACTTCTCCGGAAAGAGAGGGTGAGATTGATTTTGTGGCCGTAGATGCTAAACCTATGGTCATAGATGCAGACACGGAAATGAAGCCTCTGATAAATGAAGACGACAAAGGAACAATCAGACTTGGGGGGGCTAAAGAGGCGCTGAACGTGGAGTCCAAAGCTATACCAGCTGAAGAAGCTGATTCAAAGATTCCCATTGCTTGCAAAGATAGGAATTTTGACCTTCAGCTTGATTTAGTTAAGACGATTGATAGAGATGGCCCCAACAAGCTCCACCAGCATGTTCAGAAACAGCCGCCACAACCCAGCTCGGAAAAGGCTGGATCTGCCGTACAAGCGGGCTCTCTTCCTTTGCCCATGTCTCTACCTGGCTGGCCAAGTGGGCTGCCTCCTATGGGATATGTGGCACCACTACCAGGAGTTGTGTCTGTGGATGGAAGCGCTTTGCCTGCTGCTGCTATGCAGCCACCAAATTTCCTTTTTCCTCAACCTCGGCCGAAGAGGTGTGCTACGCACTTCTACATTGCTCGGAATATATTGTATCATCAACAAATTGCGAGGATGAATCCATTCTGGCCAGCAGCAGCAGGCTCTGCTTCCTTGTTTGGGGCCAAGCATGGTAATCTCAGCATCGCGCCCTCTACAGATTTGCAAGGAAATCTTCCGAAAAGAGGGGTAAATGCAATGCAGGATAAGGGACAGAGCCTTGGAATGTTTACGGGTCATGCTGGGAAGGATAGGGGCTCTCAAGCTGTTAACGTTGTCGATGCCTCTCAGAGAAAGCAAATTTTGCTTCAGCAAGCTCTACCGCCTGGAGCACCTAGTAATATCCTGCATGGCCCTGCTTTCATTCTGCCTCTGAGCCAGCAGCAACAGGCAGCTGTAGCCACATCGGTTCGGCCAGTTTCTGTGAAGTCTCCTCCTCCTAGTGGGAATGCCAACGGCAGTGTGGCTTCAAATGCTTCAAATCCAGCCTCTGTTAGTACCTCACCCGCTGCAGCGATGAGTTTCAACTATTCGGGTGTGCCTGGCAATGAACCACAGTATTTAGCCATTTTGCAGAACAATGGATATACATACCCAATTCCAGCACATGTAGGGGCACCGCCTGCATATAGAGGAAGCCATGCTCATTCAATGCCGTTTTTCAACGGGTCGTTTTATTCTTCACAAATGCTTCATCCTTTGCAGCTTCAGCAGCAACCGCCACCTCAGTCTCACCCTAATCAACAGGGACTTCAAAATGCTAATACTGCCAATGGTTCCTCATCGTCTCAGAAGAACATGTCTAATCAGCAGCAGAGGCCACATGGGAGCAGTTTCAGTGGGAACTTTCAAGGCTTTCCTGCATCCAGAAATCAGCCATCTCAATCACAGCACCCACAGCAGCAGCAGAGCCACGCCTCTCATCAAACAAGGCAACATGAGTCTGAAATTGGCGGTGAAGATAGCCCGTCCACTGCTGATAGTCGAGTGAATCTTGCTAATCTGAGTGTCTACGGTCCAAATTTTCCAATGCCAATGCATACTCCTAATTTTGCTATGATGCCTCCTGCATCAATGGTGGCCGCCGGTGGGGCACCTATTGACAAGAAACAGCAGCCTCAACAACAGTCACAGGGTTCAAAAGGTCTGGAACAATCTCAAACTATTCCTTTGTCTTTTGCTCCTCCCAATGGGGCGCCCTCTGCTCCTGGGCTCGACCTTTCATCCTTATCACCAAACCATCCTATTTTTCAAAGTCTTCCTGAGATCACCAGGCAAGGGTATCATCAGATTATGGCTGCTGCCGCTGCTCAGGTTGCTCAGCAGAAAAAGAATTATCGTGTAGCAGAAGAAGGAAAAATCACACATTCATCTGTTGGGGAGGATGAGAGAAAAAATATGTCTGTTAAGGCACCTCCAACTGTTGGTCAGTCCATTGCCTTCTCTAGAACTGATTTAGCTGAGACATTAATTTCCTCAATGCCAGCTGGGGCTGCTGTTGATAGCTCTGCAAGAACTCTCAAACTTGGTTCTACTGCTAGAGCTTCAGGTTCCGTTATGCCGTCTGGCATGAGCACTGTAAATATGTGTGGTTCCCAGCATCAACTACAGCGAAATCATAATCATCAGCAGCAGCAGCAGCAGCAACAGATGATTCAGCTTCAAAAGCAGCAGCAATATGCAGCTGCTGCAGCTGCGGTAGTGAGGACGAAAACATCAGCAACAAGTAATGGCAATGTTTATGCCGAGCACCCTCCTGCGTCTTCGATGGCTGCGAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCCAAGTAACAGCAATAGTCCTGCTCAATCTCCTCAGTGGAAAAATTCTGTAAGAACCACCTCATCTCAGGTACCAACCCCCCCTCATTCTTCATCAAATACATCATATATCAAAAATCTTCCCCAACAGCAGCAGCAGGGGCGTCCACAGCAAAACCACTCTCAGATTTCTTTTGCGGCGAGCTCAAAATCTACAGCACAATCACAAGGACAGCAACCTGCAAGCAGTAATCATCCGCAATCGCCCGGAATGATTGGCTCACCAACTAATTCTTCACTCTCAAAGGGTGCCGGTGGAAGCCCACGGACAGCTACTTCAGGTTCCAAGAGTCATAAAGTTGGTCAATCATCTTCTTTATCATCACAGCAGACAAAGAATCCTACATCTATGCCCCCTCAGAAGTTATCTCCTGCTGGTGAGCGAAACGTTACGCCAATTCTTGGCAATAATCAAATGACCTCTTCAAGTTCTGGAACTAAATTATCCCAACAGTCGCAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACATTTGTCGAAGCAATCATTGCAACAAGCCCAGGTGCTCTTCCCTTATATGCAGGCCCAAGTTTCCCATTCAAGTAGCAGTCCAACTGCTTCACCTTCAGGCGGTTATTATCCAAGGCGTCGTCCTGAGCAGCAATCACAATTGCAGGGCTCAGGAGGAACATCCTCAAATGGAATGCTATCCCTATGCCACCCTGTTACACTAGGAGGTAACAGCACTACTGATCCTGCTAAGGCCGTTGCTGCTGCGACTGCCGCCACAGCCAGCCTTTCAGCCAACAATATGAAAGGCGGTAGCTTATCCACACAAGCCATTCTCCATCCTGCTCAGTTTGCTGCTGCACAGTCCTCCGGTAATCCTCATCAACTTGTACCTGCTGGTTTTCCTTACGTGCATACCGCTGCAGTGCAAGTGAAATCAACAGAGCAGAAACAACCTGCGGGTGGGTAG 4758 48.99 MDRNREARRTTTNMAASNGLSRRRYRTSSLRDSPEDDGQLELQDTVRLRDRGSGKKDRDRDRDRDRDRDRERDRLSRSKRRRADRLIHGGSNREDGGEDSSEESVNDEEDEEDDDGGGGGGGGGGASVRMLPPNPAAILSHRKTFPPAKSFRAAPSWKAADEMIGVSVPRKARSASTKRSHECWPAATGGGTVIEAINQQASTSPVRPSLTAMGATFQPPASPSSSNAPVRKKLKQTGPKLRPLKSSSKPSSTAQDEIEIEIAEVLYGMMRQPQGPPKQEPSTTDTMKFDSKSTTDAKSRVSSPISNSSDLPTPSILPQNSSSSVTPISTTAPKRKRPRPVKYDDENTATFSLRNSPISSRAKAEADQPPTNAEIPSSNVEKVSGSAGENVVSNESANSLALPESRPESMKVDTTSAMPNSKPLTEESVGKDLGSSKEEPQSPLKESNGPRLEDKREDMTATKSNSSTFDAENQGDDKYKIDLMAPPPLRTSPEREGEIDFVAVDAKPMVIDADTEMKPLINEDDKGTIRLGGAKEALNVESKAIPAEEADSKIPIACKDRNFDLQLDLVKTIDRDGPNKLHQHVQKQPPQPSSEKAGSAVQAGSLPLPMSLPGWPSGLPPMGYVAPLPGVVSVDGSALPAAAMQPPNFLFPQPRPKRCATHFYIARNILYHQQIARMNPFWPAAAGSASLFGAKHGNLSIAPSTDLQGNLPKRGVNAMQDKGQSLGMFTGHAGKDRGSQAVNVVDASQRKQILLQQALPPGAPSNILHGPAFILPLSQQQQAAVATSVRPVSVKSPPPSGNANGSVASNASNPASVSTSPAAAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPAYRGSHAHSMPFFNGSFYSSQMLHPLQLQQQPPPQSHPNQQGLQNANTANGSSSSQKNMSNQQQRPHGSSFSGNFQGFPASRNQPSQSQHPQQQQSHASHQTRQHESEIGGEDSPSTADSRVNLANLSVYGPNFPMPMHTPNFAMMPPASMVAAGGAPIDKKQQPQQQSQGSKGLEQSQTIPLSFAPPNGAPSAPGLDLSSLSPNHPIFQSLPEITRQGYHQIMAAAAAQVAQQKKNYRVAEEGKITHSSVGEDERKNMSVKAPPTVGQSIAFSRTDLAETLISSMPAGAAVDSSARTLKLGSTARASGSVMPSGMSTVNMCGSQHQLQRNHNHQQQQQQQQMIQLQKQQQYAAAAAAVVRTKTSATSNGNVYAEHPPASSMAAKFPNALSSFSQNLVPSNSNSPAQSPQWKNSVRTTSSQVPTPPHSSSNTSYIKNLPQQQQQGRPQQNHSQISFAASSKSTAQSQGQQPASSNHPQSPGMIGSPTNSSLSKGAGGSPRTATSGSKSHKVGQSSSLSSQQTKNPTSMPPQKLSPAGERNVTPILGNNQMTSSSSGTKLSQQSQQQQQQQQQQQQQHLSKQSLQQAQVLFPYMQAQVSHSSSSPTASPSGGYYPRRRPEQQSQLQGSGGTSSNGMLSLCHPVTLGGNSTTDPAKAVAAATAATASLSANNMKGGSLSTQAILHPAQFAAAQSSGNPHQLVPAGFPYVHTAAVQVKSTEQKQPAGG 1585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1252380 1258429 - CmaCh17G002460.1 Cma17g00246 312141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00246 1585 MobiDBLite consensus disorder prediction 201 232 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 788 819 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 276 331 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1255 1439 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 25 99 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 887 979 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 579 602 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 201 497 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 584 600 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1021 1046 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1255 1393 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1014 1062 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1401 1439 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 887 960 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 100 117 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1455 1496 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1455 1469 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 348 423 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1 145 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 10 24 - -
Cma17g00246 1585 PANTHER PROTEIN TIME FOR COFFEE 1 1581 IPR039317 GO:0042752
Cma17g00246 1585 MobiDBLite consensus disorder prediction 1476 1496 - -
Cma17g00246 1585 MobiDBLite consensus disorder prediction 241 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00246 - - - cpep:111807464 2585.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01150 Cma17g00246 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00246 Cma-Chr17:1252380 Cma17g01175 Cma-Chr17:8170098 9.04E-109 wgd
Cma17g00246 Cma-Chr17:1252380 Cma08g01150 Cma-Chr8:7089518 0 wgd
Cma17g00246 Cma-Chr17:1252380 Cma08g00348 Cma-Chr8:1986984 1.16E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00246 Cma_Chr17 FPKM 21.697239 25.972889 25.222015 27.118921 30.534712 31.079832 29.58489 28.429457 25.937023 22.901762