Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00249 ATGCTGTCGAATCAGCTGCAGAATGGGATGGATAGAGCAAAAAGCATGTGGTCTCGTCTTCCGGACACCGATGAAAATGAGGACGACCTCGTTAGCTTCTTGAAGAAGAACGATGGGGGCGGCGTCGAAAGCCTTGATTACGAGGTCATCGAGAATTATGCTTACTGGGATGAACAGGCGCAAAGAGGAAGATTATTTGTTGGCTATAGTGTGGTAGTTAAGTGGCTGTATGCTTTGTTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCTCTAATTCAGAAGTCATATGTGGCTGGTTTTATAGTATACTTAGCCATCAACTTGGGTCTAGTGTTTTCATCTGTATATATAGTCACTCATTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCTTAATCGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAAGGACCGCTTGTACATACAGGCGCCTGTATTGCTTCTTTGCTAGGACAAGGTGGATCTGGTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTAACATGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTTACGTCTGCTGTGGTGGCTGTTGTGGTGCGTGCAGCGATGGGATGGTGTAAGAGTGGGAAGTGTGGCCATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTACTCTTTTGGGGAGTTGTTGCCTATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACGAATTGGCGACGAAACCATTTGCACAAAAAGGGGAACCGAGTCAAGATCATTGAAGCTTGTCTCATCTCAGTATTAACATCAATTATCTCGTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAATCTGATCCTGATTTGGGTAATGAATGCCCAAGGCCTCCGGGAACGTACGGGAATTATGTCAATTTTTATTGTAGCAAGGGCAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACGATGCATGAATTCAGTGCGCAGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCAGTCGTGACGTTTGGTACTGCTGTACCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACTTATGGACGTTTGGTTGGAAAGTTCGTGGTTAGTTTCTACAAAAAGCCGAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCGTTTCTAGGAGGCTCTATGCGAATGACAGTGTCTTTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAGTTTTTACCTCTCATAATGCTTGTCCTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTCTACGAAGAGCAAGCCCTGTTGAAGGGTATTCCGTTACTGGAATCGAGACCGAAGTACCAGATGCGGAAAATAACAGCAAAGGAGGCCTGTGGAAAAAGGGTGGTCTCGTTCCCCCGTGTTGTTAAGGTTGCTGATATTGTTAGTATTTTACGGAGCAACAGACATAATGGCTTTCCTGTGATTGATTACTCTCGAAACGGAGAAACACGTGTCATTGGACTAATGCTTAGAAGTTACTTGTTAGGACTACTGCAGTCCAAAGTAGATTTTCAGCACAGTCCTTTGCCTTCTGATCCAAGAGGATCCATGCCAACCAGGCATAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTCCCCTTTTTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAATTGGGTCTGAGACACGCGTTTGTCGTTCCCCGTCCAGCAAATGTGGTCGGTTTGATCACTCGAAAGGATCTGTTGATAGAGGATAGCGAAGATTCGGATGCTATGGAGCTACAATCGACTAGTGTAAGAGCTCGGCGTCGAGATAGAAGAATACATACAGCGAATGGGGATGTCGAGAGCCCACTTCTTAACGGACTTTTGGTCAATAACACAGACGGCTGA 2394 43.44 MLSNQLQNGMDRAKSMWSRLPDTDENEDDLVSFLKKNDGGGVESLDYEVIENYAYWDEQAQRGRLFVGYSVVVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSGKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGVIGGLLGALFNQLTLYMTNWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKSDPDLGNECPRPPGTYGNYVNFYCSKGNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSAQSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQALLKGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADIVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPLPSDPRGSMPTRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPANVVGLITRKDLLIEDSEDSDAMELQSTSVRARRRDRRIHTANGDVESPLLNGLLVNNTDG 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1275208 1282796 - CmaCh17G002490.1 Cma17g00249 312144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00249 797 ProSiteProfiles CBS domain profile. 702 758 IPR000644 -
Cma17g00249 797 Pfam CBS domain 703 749 IPR000644 -
Cma17g00249 797 Gene3D Clc chloride channel 68 573 - -
Cma17g00249 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 789 - -
Cma17g00249 797 CDD ClC_6_like 43 572 - -
Cma17g00249 797 Gene3D - 574 756 IPR046342 -
Cma17g00249 797 SMART cbs_1 705 753 IPR000644 -
Cma17g00249 797 SMART cbs_1 592 644 IPR000644 -
Cma17g00249 797 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma17g00249 797 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma17g00249 797 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma17g00249 797 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma17g00249 797 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma17g00249 797 SUPERFAMILY CBS-domain pair 577 749 IPR046342 -
Cma17g00249 797 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 789 - -
Cma17g00249 797 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 749 - -
Cma17g00249 797 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma17g00249 797 SUPERFAMILY Clc chloride channel 52 574 IPR014743 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01154 Cma17g00249 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00762 Cma-Chr16:4173796 Cma17g00249 Cma-Chr17:1275208 0 dispersed
Cma17g00249 Cma-Chr17:1275208 Cma08g01154 Cma-Chr8:7103231 8.81E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00249 K05016 - csv:101215989 1485.7