Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00251 ATGTCTCGTGTTCGGAATTTCAGCTCTCATGGAGGAATGGCTAATGATGATTACTGGATCACCATGAATCGATATGATGTCAGAAACCCCCGTCAGATGGCAAGTAGGAGCAATTATTATGATTATGGCTATAGCAACCATTTTGAATTCTCAGGACAGTATAAAGAGCCGGTTGATAGGTCTATTTATGCGAGGCCTGATATCTCAAACTACATCAGGCCTCATAACTCTCAGTCCTTTAAAAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGGAGGTACCATTGGCAGGCGCGGACATATGATCATGGACCTTCAATCTATAGCAATTTGGTCCATCCTCCTCCAAGATCCAACAATGATGTCTCTACATCTGCCAGCTGTAAAAGAGATCGCTCAATAATGGAAGATGATGAGCCTTCTTTCATGTCCAGGGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATTGACACGCTACGTGAAACACATCTGCGGTACACATATTGTGCCTTCCTTCAGAGTCTTGGTTTGCACCTTGAGTTACCCCAGACTACCATTGGCACTGCAATGGTTCTATGCCATCGGTTTTTTGTTCGAAGATCACATGCTTGTCATGATAGATTTTTGATTGCCACTTCTGCACTCTTCCTTGCTGCAAAATCCGAGGAGACACCACGACCTTTGAACAATGTCTTGCGAGCTTCATCTGAAATTCTGCACAAACAGGATTTTAATCTCTTGTCTTACAAGCTTCCTGTTGATTGGTTTGAACAATATCGTGAAAGAGTAACAGAAGCTGAGCAATTGATACTGACTACTCTAAACTTTGAACTCAACGTTCAACATCCCTATGCTCCTCTTATGTCTGTTCTTAATAAGATAGGTCTTTCACAGTCCATGTTGGTGAATCTTGCACTGAACTTGATCAGTGAAGGTAATCTTTCTGGATTGTCTAGTCTATTTAGCAAGCATGTCCTTGCAATTGTGAAAAGTAGATTTGGGATATGTGGGTGCAAGAACCTCAATGGAATGACAAATTTCTTGAATTTTGGCGTTCATTGTGGCACAAAAGAGGATGATGCACTGTTTTCCTCCTCTCCCTGGAGCGTGCTCTCTAGGCCGCCATTAATTTGCCTTACCTTGAAAGAAATGGAGTCATTTCCTTATGAACTTTTTGACTCAGAAAGGCCTTTGTGTGGAATTGAATCTGCTATCCATTACCTTTATAACCTAGAGAACTGCTGCCAATGA 1266 41.94 MSRVRNFSSHGGMANDDYWITMNRYDVRNPRQMASRSNYYDYGYSNHFEFSGQYKEPVDRSIYARPDISNYIRPHNSQSFKRRKFSASRWEDSGRYHWQARTYDHGPSIYSNLVHPPPRSNNDVSTSASCKRDRSIMEDDEPSFMSRDEIERCSPSRKDGIDTLRETHLRYTYCAFLQSLGLHLELPQTTIGTAMVLCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASSEILHKQDFNLLSYKLPVDWFEQYRERVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSMLVNLALNLISEGNLSGLSSLFSKHVLAIVKSRFGICGCKNLNGMTNFLNFGVHCGTKEDDALFSSSPWSVLSRPPLICLTLKEMESFPYELFDSERPLCGIESAIHYLYNLENCCQ 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1288119 1292518 - CmaCh17G002510.1 Cma17g00251 312146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00251 421 Pfam Cyclin, N-terminal domain 144 284 IPR006671 -
Cma17g00251 421 PANTHER CYCLIN-T1-4-LIKE ISOFORM X1 70 332 - -
Cma17g00251 421 PANTHER CYCLIN 70 332 IPR043198 GO:0006357|GO:0016538
Cma17g00251 421 Gene3D - 127 309 - -
Cma17g00251 421 SUPERFAMILY Cyclin-like 144 285 IPR036915 -
Cma17g00251 421 CDD CYCLIN 169 240 IPR013763 -
Cma17g00251 421 SMART cyclin_7 175 277 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00251 K15188 CCNT; cyclin T - csv:101216477 588.186
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01155 Cma17g00251 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00251 Cma-Chr17:1288119 Cma02g00026 Cma-Chr2:134324 1.83E-51 dispersed
Cma17g00251 Cma-Chr17:1288119 Cma08g01155 Cma-Chr8:7112833 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g467 . Blo12g00321 Bda03g00895 . Bpe04g00840 . Bma04g00793 . Cmo08g01129 Cmo17g00236 . . . . . . . . . . . . . . Cla06g00566 Cam06g0606 Cec06g0606 Cco06g0612 Clacu06g0592 Cmu06g0587 Cre06g1353 Cone14ag0837 . . . . . . . . . . . . . . . . . . Cma08g01155 Cma17g00251 Car08g01033 Car17g00225 Cpe12g00207 . Bhi12g01732 . . Lac12g2301 . . . . . . . . . . Lsi09g01335 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00251 Cma_Chr17 FPKM 31.25926 35.843487 33.918453 33.279701 33.938564 34.926525 37.973305 25.70999 23.774212 23.429338