Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00255 ATGAATATGGCGCATTTCGACACCGACCTCCCTCCTCTCGACCACCTTCACTCCACCAGATCCCTCATCTCTGCTCTCAATTTACTCTCCCGGAATCTCCCTCTTCCTCCCGACCTCTTTGAAACTGTTTCTTCCATTTATTCCGCTCCTCAGGATCAAGATCCCGCTACTCTCAGTGATTCGGATGAGCTTGGAGATTCTGTTCAAGAAGATCTATTGAGTGACCTTGGAGATGCTTTGGCTAAGCAACGTTCAAATTTTGAATCTGGTTCTGGGTTGGAACAATTGAGAGAAGAACGTTATCGAGGTCAAATACAATGGCGGTTGAATGATCTAGAAGAATTACCTTCAAGTAGAGGGGAAGACCTACAGACGAAGTGCTTGCTTGAACTGTATGGATTAAAGTTACTAGATTTGCAAAAAAAGGTACGATCTGATGTGAGTTCAGAGTACTGGCTTCAAGCAACTTGTGCATACCCAGACAAACAATTATTTGATTGGGGCATGATGCGATTGCACCGTCCACCATATGGTGTAGGAGATGCTTTTGCCATTGAAGCTGATGATCAACTGCGAAAGAAGCGGGATGCTGAGAGGACATCAAGGTTAGAAGAGGAGGAGAAAAACCAAATCGAAACTAGGAAAAGAAAGTTTTTTGCTGAGATACTAAATGCTGTTCGTGAATTCCATTTACAAATTCAAGCTTCTGTAAAACGTCGGAAACAGAGAAATGACGGAGTTCAGGCATGGCATGGAAGACAAAGACAACGTGCTACAAGGGCAGAAAAACTGAGGTTCCAAGCACTAAAGGCAGATGATCAAGAAGCTTACATGAGATTGGTTAAGGAGAGCAAGAATGAACGATTAACAACACTTCTTGAAGAAACAAACAAACTGCTTGTTAACTTGGGTGCTGCTGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATTGAGACCCTGGATGAATCTGATGTTGATTTACAGGAATTGGATTCTTCAAAGAATGCAACCCCTCAAGAACTACTCATGGATGAAGATTTAGATGCCACTGATTCTGACCGCAATTATGAAAGTGGTGATTTGCTTGAAGGACAGCGACAATATAACTCTGCCATTCATGCAATTCAGGAAAAGGTCACCGAGCAGCCTTCCATGCTACAAGGAGGAGAATTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGCTTTCATTATTCAATAACAATTTAAATGGAATATTGGCTGATGAAATGGGACTGGGAAAAACAATACAAACAATCTCATTGATTGCTTACCTCATGGAATACAAGGATGTGACTGGACCTCATTTAATAGTTGCTCCCAAGGCAGTACTTCCAAACTGGATTCATGAATTTACAACATGGGCCCCAAGTATCGCTGCTGTTCTTTACGATGGACGTCAGGAGGAGAGAAAGGCTATAAAGGAGGAGCTATTGAGTGAAGGAAAATTTAGTGTCTTGATTACACATTATGATCTCATTATGAGAGATAAATCATTTTTGAAGAAAATACACTGGTATTATATGATTGTTGATGAAGGCCATCGGCTGAAAAATCGTGATTGTGCTCTTGCACAAACACTTGCAGGCTACCAGATCAAACGGAGACTTCTTTTAACTGGTACACCTATCCAGAACAGTTTGCAGGAATTATGGTCCCTGCTTAATTTTCTCCTGCCGCATATATTTAATTCTGTCCAGAATTTCCAGGAGTGGTTCAATGCACCATTTGCAGATCGGAGTGATGTTACACTGACAGATGAAGAAGAGCTATTGATCATTCGCCGTCTGCATCATGTTATTAGGCCATTCATATTGAGGCGAAAAAAGGACGAGGTTGAAAAGTATCTACCTGAAAAGTCACAAGTCATACTAAAATGTGATATGTCAGAATGGCAGAAAGTATATTATCAACAAGTAACTTCTATTGGCAGAGTTGACACGGGTTCTGGCAAATCGAAGTCCCTACAAAATTTAACGATGCAGCTGAGGAAGTGTTGTAATCATCCATATCTTTTTGTTTTGGGAGATTATAATATTTGGCGCAAGGAGGAGATCGTCAGAGCTTCTGGGAAATTTGAACTACTCGATCGTCTGCTCCCGAAGCTACATAGAACTGGGCATAGAGTCCTGCTTTTCTCACAAATGACTCGTCTTATGGACGTTCTTGAAATTTATCTTCAACTCCATGAGTTTAGATATCTTCGACTTGATGGTTCGACAAAAACTGAAGAAAGAGGGTCTCTAGTGAAGCAATTTAATGCTCCAGACTCACCGTTCTTCATGTTTCTCTTGAGTACTCGGGCCGGTGGTTTAGGTTTGAACTTACAGACTGCAGATACTGTAATTATCTTTGACAGTGATTGGAATCCTCAAATGGACCAACAGGCAGAGGATCGAGCTCACCGTATCGGACAAAAGAAGGAAGTAAGGGTGTTTGTCCTGGTTAGTGTTGGATCAGTTGAAGAGGTTATCCTGGAGCGTGCAAAACAGAAGATGGGGATTGATGCCAAGGTTATCCAAGCTGGACTTTTCAACACAACTTCAACAGCTCAAGACCGAAGAGAGATGTTGGAGGAGATTATGCGCAGAGGAACAAGCGCACTTGGCACTGACGTGCCAAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGACGAAGAATTCTGGCTTTTTGAGAAAATGGACGAAGAAAGAAGACAGAAGGAGAAATATAGATCTCGTTTGATGGAAGAACACGAGGTACCTGAGTGGGTATACTCGGTACCCGACGGTAACGAAGAGAAGAACAAGGGTTTGGAAATTCTCAGTGTGGCTGGAAAACGAAGAAGAAAGGAGGTGGTTTATGCTGATACACTGAGTGATTTGCAGTGGATGAAAGCTGTGGAGAATGGAGAAATTCCAAACCTTTCTATGAAAGCAAATAGAAGAGAGACTCCCTCACGTGAAGGCAGTGTATCAACCAGCAATATTGTCAGCTCAAGGGCAGAGGATAAGCTGATAGAATATGATGATAACGTGCCTGTAACGAGCGAGGGAACAAGCGAAGACAATTCAGGTTTAGAACCAACCCCAAAGAGACAAAAGTCCGAAGGGGGGGTAAGTATTAGAAAGCACGAATTCTTGGCCGAATCAGGAAGCGAATGGAGTCGATGCGTAATAACATGGAAAACACACAAGAAGAAGCGATCGAGCTATGTCCAAGGCTCCACAGATTCTAGACATAACTCCAATGGAAGAGGAAACGGATGGGCTTGA 3288 42.49 MNMAHFDTDLPPLDHLHSTRSLISALNLLSRNLPLPPDLFETVSSIYSAPQDQDPATLSDSDELGDSVQEDLLSDLGDALAKQRSNFESGSGLEQLREERYRGQIQWRLNDLEELPSSRGEDLQTKCLLELYGLKLLDLQKKVRSDVSSEYWLQATCAYPDKQLFDWGMMRLHRPPYGVGDAFAIEADDQLRKKRDAERTSRLEEEEKNQIETRKRKFFAEILNAVREFHLQIQASVKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIETLDESDVDLQELDSSKNATPQELLMDEDLDATDSDRNYESGDLLEGQRQYNSAIHAIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIAAVLYDGRQEERKAIKEELLSEGKFSVLITHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRDCALAQTLAGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFADRSDVTLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPEKSQVILKCDMSEWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFVLGDYNIWRKEEIVRASGKFELLDRLLPKLHRTGHRVLLFSQMTRLMDVLEIYLQLHEFRYLRLDGSTKTEERGSLVKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPDGNEEKNKGLEILSVAGKRRRKEVVYADTLSDLQWMKAVENGEIPNLSMKANRRETPSREGSVSTSNIVSSRAEDKLIEYDDNVPVTSEGTSEDNSGLEPTPKRQKSEGGVSIRKHEFLAESGSEWSRCVITWKTHKKKRSSYVQGSTDSRHNSNGRGNGWA 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1309258 1316139 - CmaCh17G002550.1 Cma17g00255 312150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00255 1095 CDD SF2_C_SNF 692 825 - -
Cma17g00255 1095 Gene3D - 623 921 IPR027417 -
Cma17g00255 1095 SMART SnAC_2 907 969 IPR029295 GO:0042393
Cma17g00255 1095 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 570 IPR014001 -
Cma17g00255 1095 MobiDBLite consensus disorder prediction 326 360 - -
Cma17g00255 1095 Pfam SNF2-related domain 396 681 IPR000330 GO:0005524|GO:0140658
Cma17g00255 1095 Gene3D - 363 616 IPR038718 -
Cma17g00255 1095 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 871 IPR001650 -
Cma17g00255 1095 Pfam Snf2-ATP coupling, chromatin remodelling complex 908 969 IPR029295 GO:0042393
Cma17g00255 1095 SMART ultradead3 389 581 IPR014001 -
Cma17g00255 1095 MobiDBLite consensus disorder prediction 991 1005 - -
Cma17g00255 1095 PANTHER SNF2/RAD54 HELICASE FAMILY 15 1035 - -
Cma17g00255 1095 PANTHER ATP-DEPENDENT HELICASE BRM 15 1035 - -
Cma17g00255 1095 Coils Coil 187 214 - -
Cma17g00255 1095 MobiDBLite consensus disorder prediction 1079 1095 - -
Cma17g00255 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 617 IPR027417 -
Cma17g00255 1095 SMART helicmild6 730 814 IPR001650 -
Cma17g00255 1095 MobiDBLite consensus disorder prediction 980 1095 - -
Cma17g00255 1095 MobiDBLite consensus disorder prediction 1041 1055 - -
Cma17g00255 1095 Pfam Helicase conserved C-terminal domain 701 814 IPR001650 -
Cma17g00255 1095 Coils Coil 905 925 - -
Cma17g00255 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 868 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00255 - - - csv:101222943 2014.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01160 Cma17g00255 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01457 Cma-Chr6:9308257 Cma17g00255 Cma-Chr17:1309258 1.73E-124 dispersed
Cma14g01649 Cma-Chr14:12332424 Cma17g00255 Cma-Chr17:1309258 0 dispersed
Cma14g02045 Cma-Chr14:14251128 Cma17g00255 Cma-Chr17:1309258 1.44E-164 dispersed
Cma16g00655 Cma-Chr16:3406102 Cma17g00255 Cma-Chr17:1309258 2.61E-129 dispersed
Cma17g00255 Cma-Chr17:1309258 Cma20g00102 Cma-Chr20:447173 1.26E-125 dispersed
Cma06g01588 Cma-Chr6:9910230 Cma17g00255 Cma-Chr17:1309258 9.74E-33 transposed
Cma08g01207 Cma-Chr8:7412859 Cma17g00255 Cma-Chr17:1309258 4.42E-161 transposed
Cma17g00255 Cma-Chr17:1309258 Cma08g01160 Cma-Chr8:7139017 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36638 PF00176 SNF2_N 1.60E-69 CL0023 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00255 Cma_Chr17 FPKM 4.47442 6.362505 10.36778 10.25015 8.706584 7.958828 8.261226 12.534408 12.040683 11.3102