Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00256 ATGTGGGAGTGCGACCATTTCAAAGCGGCCTTCTCGCGAAAACTCCAAGGACAGGCAAATCTGTTCTCTCACAGGGGAGAGAGAGCGATGACGATGGCGATTCCGGGGAGCATTGTCGTCCTCCTTCTCCTTATGTTGCTTCTCCTCCTCCTCCTCCTCCTTCTCATTGCCTGCAAGCCATGGCGCTTCTTTTCCTTCTCTCGTTCTCGCACCATCAAGGTTCCTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCGGATGACGCTCAAAGCCAAACCAATGAGCTTCCTAGAGATTATGATTTGGAGGGTGCACTCCAAACTGATGGACATTTTCGGTCCCCAAGATTGCACGGGCTGATTCATAAACAAAGATCGCCATCTTCATCGCCCCATTTAAGTCAGGTTGATAGACCGGTTCCAGATGTAGTTCCCGATCATTTAGAAGTTATTTCAGTTGGTCAAACACTTAAACGAACTTACTTCGCAAACCAGATTCCAGAAATTCAAAAGCATTCAAAATTGAGCCCAGAATGTGATCAACTCCACGAAATTTCAAGTCAAGATGCCTCACATGAAAGAAGTTACCTCACTTTGGAGGTTGCCTCCGGTCCTTCTCGTGGGGTGCGTTATTCAATACATTCTGCAGACACGTCTAGGCTTCCGTTGACTCTTGGAAGAGTACCACCTAGTGATTTACAGCTGAAGGATTCTGAAGTCTCAGGGAAGCACGCCTTGATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACTTGGGTAGCTTAAATGGGACTTTATTAAATTCTCAACCTATCAACAATCCTGATTCTGGAAGTAGACATTGGGGTGATCCAATTGAGCTTGTGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACTTCTCAGATTGAGAATCATATTCCCTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGAGGTGGAAAAAAGCATGCCATGGAAGATGTTTGCTATTATCAATGGCCTCTTGCTGGGGTTGATCAGTTTGGACTCTTTGGTATCTGCGATGGACATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCTGCGAAGGTTGCCACAATTCTATCTGATCCACTGAGAAGGGAGAGGGTAGTATCCCTTCGTGATGCTTCAGATGTTCTTAGAGAAGCATTTTCTCAGACTGAAGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGACTGATCGTGATGAAAATTACTTTGTGCAATGTGCGAATGTTGGGGACTCTGCTTGTGTTCTGAATGTTCATGGGAAGCGGATGAAGATGACAGAAGATCACAGAATAACTAGCATTTCAGAAAGACAACGAATAGAACAAGCAGGAGAACCATTGAAAGACGGGGAGACACGTTTATGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTCCTTAAACAACAAGACCCTCGTTTCAGTTCCGAACCTTTTATCAGTGAAGTTGTCCATATAGATGAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGCGATGGCTTTTGGGATGTGATTAGCATGAAGAAGGCAATCCAGCTGGTGCATCAGGCCAGGGAGAGATACTCCAGAGGTGCAGAAAACTCAGCGGAGAAGGTCGCCAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGGTTTCTCATAGAATCACTTGTAAAGTTGAACCATAA 1812 44.65 MWECDHFKAAFSRKLQGQANLFSHRGERAMTMAIPGSIVVLLLLMLLLLLLLLLLIACKPWRFFSFSRSRTIKVPDLERPLVSDAADDAQSQTNELPRDYDLEGALQTDGHFRSPRLHGLIHKQRSPSSSPHLSQVDRPVPDVVPDHLEVISVGQTLKRTYFANQIPEIQKHSKLSPECDQLHEISSQDASHERSYLTLEVASGPSRGVRYSIHSADTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLNNMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGDPIELVSGDVITLGTTSKVYVHITSQIENHIPFGVGLASDPMALRRGGKKHAMEDVCYYQWPLAGVDQFGLFGICDGHSGVGAAKSASEILPAKVATILSDPLRRERVVSLRDASDVLREAFSQTEACMNHYYEGCTATVLLVWTDRDENYFVQCANVGDSACVLNVHGKRMKMTEDHRITSISERQRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDPRFSSEPFISEVVHIDEGSKAFAVMASDGFWDVISMKKAIQLVHQARERYSRGAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEVSHRITCKVEP 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1316673 1323211 - CmaCh17G002560.1 Cma17g00256 312151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00256 603 ProSiteProfiles Forkhead-associated (FHA) domain profile. 223 274 IPR000253 GO:0005515
Cma17g00256 603 PANTHER PROTEIN PHOSPHATASE 2C 70 64 602 - -
Cma17g00256 603 CDD PP2Cc 331 591 IPR001932 -
Cma17g00256 603 CDD FHA 197 305 IPR000253 GO:0005515
Cma17g00256 603 Pfam Protein phosphatase 2C 330 584 IPR001932 -
Cma17g00256 603 Gene3D - 326 594 IPR036457 -
Cma17g00256 603 SUPERFAMILY PP2C-like 332 591 IPR036457 -
Cma17g00256 603 Gene3D - 191 325 - -
Cma17g00256 603 PANTHER PROTEIN PHOSPHATASE 2C 64 602 IPR015655 GO:0004722|GO:0006470
Cma17g00256 603 SMART PP2C_4 313 589 IPR001932 -
Cma17g00256 603 SMART FHA_2 222 274 IPR000253 GO:0005515
Cma17g00256 603 ProSiteProfiles PPM-type phosphatase domain profile. 319 591 IPR001932 -
Cma17g00256 603 SUPERFAMILY SMAD/FHA domain 196 307 IPR008984 GO:0005515
Cma17g00256 603 Pfam FHA domain 224 299 IPR000253 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01161 Cma17g00256 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00256 Cma-Chr17:1316673 Cma09g00389 Cma-Chr9:1640856 5.58E-21 dispersed
Cma17g00256 Cma-Chr17:1316673 Cma08g01161 Cma-Chr8:7148868 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00256 K01090 - csv:101217195 986.867