Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00258 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTGGTATTTCTAGCGCCCGACGGTGACGACGGTGGGAAGTTCGGTGGCCTTGTCGAGAGGATTGGCTCCAGCATCCGAAAATCTCGAAATGGACTGTTTTCTAAGCATTCAGTGCGGGCTTTGCCTCCGGTTGCGAAAGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATTGGATGCGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTATTGCAATCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCGCAGGCTCACATACGGGAGCTGGAGGAGGAAGTGAAGCTTTTGAAGAACCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCTAGAGAGGAATCTTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTGTTAGGGAAATTTGGGTCTTTCCCTGAGTCTGTTATGAAAACCTACACGAAGCAGCTATTATTGGGACTTGAGTACCTTCATAAGAACGGCATTATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGCATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTAGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGAACTCCGTATTGGATGGCTCCTGAAGTTATTCTCCAGACCGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACGGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCACATAGGGAATACTAAGTCCCATCCACCCATTCCTGAGCATCTATCTGCTGAGGCGAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGACCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGAGCCTCACGCAGCAGTCCGTGTCTCTTCTTTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAATTCTAAGGATATAACAAAGTCTATAATCCAACGTTCAACTTGTGAGGGCTTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGAGGTACGGTCCAACTGGGGATCGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAAATCTGTTTGCTAGTTCATCGATAAAGTACAAATCTATTATATCATCAAATGATTTGAATAAGAGTTTCAATCCCATGTGTGAACCCACTGATGACTGGGCATGTAAATTGGATGAGAGCTCAGAGCTGAGAGGCAATTTAATGGAATTGTCTGGTATTCGAACTGGCCAGGAATCTACTAGCAAGGGAAATGACTTCACTTTTCCATGTGGTCAATCAACAGCTGAGGATGACGAAGAGGTTACAGACTCGAAGATTCAAGCCTTCCTGGATGAAAAGGCTTTGGAATTGAAGAAGCTACAAACGCCTTTATATGAAGAGTTCCGCAGCACGGTTAATGCAGCTAATGCTTTAGGAGCAGTTGGCACTGAGAATAGCAAGAGTGTATCTAATTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCCAGCCGTCAGAGCCGTATAAAACAAGCTAGCATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCGCCTCAAATTGGGGAATGGAACAAATTGCTTCATACACAGCCAGAGTCTTGCACACCAACGTTTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAGCGAGAAATGATGCGGCGCGGAACTGTAGGAGCAATTCACTAA 1941 43.95 MQDFFGSVRRSLVFLAPDGDDGGKFGGLVERIGSSIRKSRNGLFSKHSVRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELIAIKQVSIAANSASREKAQAHIRELEEEVKLLKNLSHPNIVRYLGTAREESSLNILLEFVPGGSISSLLGKFGSFPESVMKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPHAAVRVSSLESGKQMADSRLNSKDITKSIIQRSTCEGLKDICEMGSLRCSSVFSGNYEVRSNWGSSNFEDDMCQIDDKNLFASSSIKYKSIISSNDLNKSFNPMCEPTDDWACKLDESSELRGNLMELSGIRTGQESTSKGNDFTFPCGQSTAEDDEEVTDSKIQAFLDEKALELKKLQTPLYEEFRSTVNAANALGAVGTENSKSVSNFLKLPPKCGSPSKLRGKRLSSIDAGNCSSRQSRIKQASILQDRALQEIQSPQIGEWNKLLHTQPESCTPTFFSERQRKWKEELEEELKRKREMMRRGTVGAIH 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1332965 1338652 - CmaCh17G002580.1 Cma17g00258 312153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00258 646 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 47 554 - -
Cma17g00258 646 CDD STKc_MAPKKK 65 327 - -
Cma17g00258 646 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00258 646 Coils Coil 616 639 - -
Cma17g00258 646 Gene3D Transferase(Phosphotransferase) domain 1 65 367 - -
Cma17g00258 646 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Cma17g00258 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Cma17g00258 646 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00258 646 PANTHER MAP KINASE KINASE KINASE 47 554 - -
Cma17g00258 646 SMART serkin_6 65 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00258 646 Coils Coil 98 125 - -
Cma17g00258 646 SUPERFAMILY Protein kinase-like (PK-like) 65 342 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00257 Cma-Chr1:1197052 Cma17g00258 Cma-Chr17:1332965 1.85E-52 dispersed
Cma05g01139 Cma-Chr5:8891905 Cma17g00258 Cma-Chr17:1332965 0 dispersed
Cma14g00965 Cma-Chr14:5026924 Cma17g00258 Cma-Chr17:1332965 1.58E-73 dispersed
Cma17g00258 Cma-Chr17:1332965 Cma07g00805 Cma-Chr7:3686636 3.86E-89 dispersed
Cma17g00258 Cma-Chr17:1332965 Cma12g01073 Cma-Chr12:8486090 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69223 PF00069 Pkinase 3.00E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00258 - K20606 csv:101217427 1142.87