Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00259 ATGGGGCTTGATCTGGAGTCTCTGTCGGAGGCTACATCCGGAGCCATCGGATCTCTGGTGAGTACCACCGTTTTGTATCCTCTAGATACTTGCAAGACTAAGTATCAAGCGGAGAATCAGTCTAGCCATCAGCGGAAGTACAGAAACATATCTGATGTGCTATGGGAAGCTGTTTCAACTGGTCACGTGGGCTCGTTATATCAGGGCATTGGCACAAAGAACTTCCAGTCCTTTATTTCATCGTTCATCTACTTCTATGGATACAGCTTCTTAAAGAGAATGTATTTGAAGAGAAGTGGGAATAAAAAGATTGGAACAAAGGCAAATCTGATCGTTGCTGCAGCAGCTGGGGCTTGTACTGTCGTATTGACACAGCCTTTGGATACAGCATCGTCTCGTATGCAGACAAGCGAGTTCGGGAAGTCCAAAGGATTTTGGAAGACGCTCGCCGAGGGTACTTGGAGTGAAGCGTTTGATGGTCTCGGAATATCCCTTCTTTTGACATCAAACCCATCAATTCAGTACACCGTGTTTGATCAACTGAAACAAAGGTTACTCAGGACTCAGCTGACACGTGCATCGGGTATCGAAACGTCCCCGGAAGCTCTCTCAGCCTTCTCTGCTTTCGTGCTTGGCGCCCTCTCGAAATGTGTCGCTACAATCTTGACATACCCTGCTATCAGGTGTAAGGTCGTGATCCAGGCTGCAGAATCGGATGAAGAAAGGAACGAAGACAAACAGCACGACGATAAAAAAACCATGTCGGGTGCTCTTAATACGATCTGGAAAAGAGAAGGCTTGCTAGGATTCTTCAAAGGATTACAAGCACAAATACTGAAGACTGTGTTGAGCTCTGCGTTACTTTTGATGATAAAGGAGAAGGTTGCAAAGTCCTCTTGGATCATATTGATTGCACTTAGAAGGTATCTCTTTGTAACCAATACAAGATTAAAGGGTGCTTAA 963 45.28 MGLDLESLSEATSGAIGSLVSTTVLYPLDTCKTKYQAENQSSHQRKYRNISDVLWEAVSTGHVGSLYQGIGTKNFQSFISSFIYFYGYSFLKRMYLKRSGNKKIGTKANLIVAAAAGACTVVLTQPLDTASSRMQTSEFGKSKGFWKTLAEGTWSEAFDGLGISLLLTSNPSIQYTVFDQLKQRLLRTQLTRASGIETSPEALSAFSAFVLGALSKCVATILTYPAIRCKVVIQAAESDEERNEDKQHDDKKTMSGALNTIWKREGLLGFFKGLQAQILKTVLSSALLLMIKEKVAKSSWIILIALRRYLFVTNTRLKGA 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1340140 1343430 + CmaCh17G002590.1 Cma17g00259 312154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00259 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Cma17g00259 320 Pfam Mitochondrial carrier protein 203 296 IPR018108 -
Cma17g00259 320 Pfam Mitochondrial carrier protein 104 186 IPR018108 -
Cma17g00259 320 Pfam Mitochondrial carrier protein 7 98 IPR018108 -
Cma17g00259 320 Gene3D Mitochondrial carrier domain 3 299 IPR023395 -
Cma17g00259 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
Cma17g00259 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 298 IPR018108 -
Cma17g00259 320 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 319 IPR045900 GO:0005347|GO:0006635|GO:0015217
Cma17g00259 320 SUPERFAMILY Mitochondrial carrier 8 294 IPR023395 -
Cma17g00259 320 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1 1 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00259 - - - csv:101217653 553.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01143 Cma-Chr5:8919859 Cma17g00259 Cma-Chr17:1340140 4.02E-68 dispersed
Cma05g01144 Cma-Chr5:8923032 Cma17g00259 Cma-Chr17:1340140 3.32E-58 dispersed
Cma17g00259 Cma-Chr17:1340140 Cma04g01129 Cma-Chr4:5826721 5.59E-27 dispersed
Cma17g00259 Cma-Chr17:1340140 Cma12g01076 Cma-Chr12:8509117 8.14E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g454 . . . . . . Bma04g01199 . . Cmo17g00246 . . . . . . . . . . . . . . Cla06g00557 Cam06g0598 Cec06g0596 Cco06g0603 Clacu06g0584 Cmu06g0579 Cre06g1345 Cone14ag0831 . . . . . . . . . . . . . . . . . . . Cma17g00259 . Car17g00233 Cpe12g00215 . Bhi12g01818 . . . . . . . . . . . . . Lsi09g01342 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001531 4 2 2 4 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 3 2 2 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00259 Cma_Chr17 FPKM 10.695438 10.59379 15.423384 15.307441 11.486973 11.022829 10.914524 39.696678 40.702328 40.115856