Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00260 ATGGCGACAACTCATCTCTGTTTTCTTCTCACATTGCTGCTCGCTTCCATCTTCGTCTCCAATCACCCAGTCAGATGCGACGATGATGATCTTCATAGAGGCATCAATAGATATCGTGCATCCTTGAACTTGCCAGCGCTCGTCGAGAATGACAACGCGGAGTGCCTTGCTGATGAAATAGCTGAGAAATTCAAGAATCAACCTTGTACAAACACCACAGGTTCCAACACAATATCAGGCTCTGAACCTCAGTTTGCTGACTTTCCAAACTTATTAGCCAAATGCCATTTGAATGTCTCAAACACAAGAGATGGAACCATAATGCCTGCCTGTGTTCCGAACCGTGTTGCTGATCTTGTTCTCACAAACTTCACAAAATCTCAGTACTCAGGTAAACTTAACGATACCAAGTACACGGGAATCGGCATCGGTACCGAAGACGATTGGGTTGTCGTTATTCTTACCACCAGCACAGCAGAAGGAAGTTTTGCGTCAGCAGTAGCATCAAAGAACACACCTACTCTGGTTTCTCAGATTGGTTTGTTCTCTCAGTTGCTGTTCTTGATGCTGTCTTCTGTCTTACTGTTGTAG 591 44.67 MATTHLCFLLTLLLASIFVSNHPVRCDDDDLHRGINRYRASLNLPALVENDNAECLADEIAEKFKNQPCTNTTGSNTISGSEPQFADFPNLLAKCHLNVSNTRDGTIMPACVPNRVADLVLTNFTKSQYSGKLNDTKYTGIGIGTEDDWVVVILTTSTAEGSFASAVASKNTPTLVSQIGLFSQLLFLMLSSVLLL 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1343979 1346407 - CmaCh17G002600.1 Cma17g00260 312155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00260 196 PANTHER OS07G0645000 PROTEIN 3 196 IPR045285 -
Cma17g00260 196 PANTHER OS07G0645000 PROTEIN 3 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00260 - - - csv:101217896 313.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01146 Cma-Chr5:8930211 Cma17g00260 Cma-Chr17:1343979 1.25E-42 dispersed
Cma10g01078 Cma-Chr10:6953418 Cma17g00260 Cma-Chr17:1343979 5.92E-34 dispersed
Cma12g01078 Cma-Chr12:8523835 Cma17g00260 Cma-Chr17:1343979 3.40E-39 dispersed
Cma12g01079 Cma-Chr12:8528281 Cma17g00260 Cma-Chr17:1343979 6.15E-14 dispersed
Cma17g00260 Cma-Chr17:1343979 Cma08g01163 Cma-Chr8:7162156 3.88E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g452 . . . . . Bpe14g01311 . . . Cmo17g00247 . . . . . . . . . . . . . . Cla06g00556 Cam06g0597 Cec06g0595 Cco06g0602 Clacu06g0583 Cmu06g0578 Cre06g1344 . . Cone7ag0227 Cone4ag0217 . . . . . . . . . . . . . . . . Cma17g00260 Car08g01040 Car17g00234 Cpe12g00216 Cpe17g00133 Bhi12g01817 . . . . . . . . . . . . . Lsi09g01343 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008559 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00260 Cma_Chr17 FPKM 3.552737 4.209943 5.141314 5.695116 9.932659 11.687819 9.077445 1.239395 2.335578 1.021505