Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00261 ATGGTAGCCGGCGTTGACGGTAGAGTATCATTCTCGGCGGCGGCACACTTGCACGGCGCAATGGCATTGCAGAAAATCAGGAGCTCCATCTTGCAGGTGAGGTTCTGTAATGGAGAACTCATGGGGAAGAAGCTTACCTTGCAACAGAGGAAGCATGCCGTTAACTACATTCCAAATGCCAGAAGGAAAGTTCGTGTGTCGTCTCTTCTTGCCAATATAGCAGAATCTGAATCCAAGTTGAAGGAACTGAACATGGAAAAACCTGACCCGAGGACGGTGGTAGCGATTGTACTGGGAGGTGGAGCGGGAACTCGTTTGTTCCCGCTCACGAAACAGAGAGCAAAACCAGCGGTTCCAATCGGTGGAGCTTATAGGTTAATCGATGTGCCAATGAGCAATTGCATAAACAGCGGAATCAACAAGGTTTACATTCTCACGCAATTCAACTCTACATCGCTCAATCGGCATCTCGCTCGTGCCTATAACTTTGGTGGCGGAGTCACCTTGGGCGATGGTTATGTAGAGGTTCTAGCAGCGACTCAAACTCCAGGAAAGGCTGGAAAGCAGTGGTTCCAAGGGACTGCCGATGCAGTACGACAGTTCCATTGGCTCTTTGAGGTATTTATAAATTAG 633 48.97 MVAGVDGRVSFSAAAHLHGAMALQKIRSSILQVRFCNGELMGKKLTLQQRKHAVNYIPNARRKVRVSSLLANIAESESKLKELNMEKPDPRTVVAIVLGGGAGTRLFPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSTSLNRHLARAYNFGGGVTLGDGYVEVLAATQTPGKAGKQWFQGTADAVRQFHWLFEVFIN 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1347187 1349277 + CmaCh17G002610.1 Cma17g00261 312156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00261 210 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 190 198 IPR005836 GO:0005978|GO:0008878
Cma17g00261 210 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 99 118 IPR005836 GO:0005978|GO:0008878
Cma17g00261 210 SUPERFAMILY Nucleotide-diphospho-sugar transferases 92 206 IPR029044 -
Cma17g00261 210 Coils Coil 66 86 - -
Cma17g00261 210 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 73 209 IPR029044 -
Cma17g00261 210 Pfam Nucleotidyl transferase 95 206 IPR005835 GO:0009058|GO:0016779
Cma17g00261 210 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 2 206 - -
Cma17g00261 210 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 2 206 IPR011831 GO:0005978|GO:0008878
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00261 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - csv:101204159 328.561
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01686 Cma17g00261 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00261 Cma-Chr17:1347187 Cma20g00840 Cma-Chr20:4022751 1.25E-62 dispersed
Cma14g01686 Cma-Chr14:12543542 Cma17g00261 Cma-Chr17:1347187 2.31E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g451 . . . . . Bpe14g01312 . . . Cmo17g00248 . Cma14g01686 . Car14g01520 Sed02g1259 . Cpe03g01421 Bhi01g00844 Tan10g0872 Cmetu11g1384 Lac12g2316 Hepe05g1531 . Lcy11g1518 Cla06g00553 Cam06g0596 Cec06g0594 . Clacu06g0582 Cmu06g0577 Cre06g1343 . . Cone7ag0226 . Lsi05g01444 . . Cme06g00631 . . . . . . Bma02g00687 . . . Cmo14g01731 . Cma17g00261 . Car17g00235 Cpe12g00217 . Bhi12g01815 . . . . . . Cla05g00567 Cam05g0623 Cec05g0633 Cco05g0628 Clacu05g0619 Cmu05g0587 Cre05g0655 Lsi09g01345 . Chy06g00601 Cme11g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020605 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00261 Cma_Chr17 FPKM 0.0 0.0 1.11347 0.924485 19.309725 23.386677 18.252821 0.643447 0.38238 0.739593