Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00263 ATGGACCTATTATCTAAATCTTCTACCCACCTCTTCTTCGATTACCAATTTGGGCAGGATGCGAGAAGCAAGGAAATTGAAGATGTGTTGATCCTTTCTGGGGATCACCTGTACCGAATGGACTACATGGACTTCGTTCAAAATCATCGGCAGAGTGGTGCAGACATCACTCTTTCTTGTATCCCAATAGATGACAGACGAGCATCAGATTTTGGGCTTATGAAGATCGACAATAGCGGAAGGGTTCTTTCATTCAGTGAAAAGCCTAGAGGGAAAGACCTGAAGGCGATGGAAGTGGATACAACAGTTTTAGGACTTTCAAAGGACGAGGCACTGAGAAAGCCATACATTGCTTCCATGGGAGTTTATGTATTCAAAAAGGAGATACTTCTAAACATTTTAAGATGGCGCTTCCCAACTGCCAATGACTTTGGATCAGAGATAATCCCTGCCTCAGCAAGAGAATTCTTCATGAAGGCATATCTCTTTAATGATTACTGGGAAGACATTGGGACTATTAGATCCTTCTTTGAGGCTAACCTTGCGCTGACTGAGCAGCCACCAAGATTTAGTTTCTATGATGAAACAAAGCCAATCTACACTTCGAGAAGAAACCTTCCTCCAACGAAGATCGAGAGTTGCAAGATTGTCGATTCAATCATATCACATGGATGTTTCTTGACTAACAGTTTCATAGATCACAGTGTCGTTGGTATCCGATCTCGCATAAATTCTAACGTACACCTCAAGGACACAGTAATGCTTGGAGCAGACTTCTATGAAACTGATGGTGAAGTTAGTGCACTTTTAGCAGAGGGAAGAGTGCCAGTTGGAATTGGAGAAAATACAAAAATCAAGGACTGCATCATTGACAAAAATGCCAGAATAGGGAAGAACGTTGTTATTGCTAATTCAGAGGGCGTACAAGAGGCAGATAGGTCGTCAGAAGGCTTTTACATCCGCTCTGGAGGAGGCTTCCCTTTTGATTTTGTCGGCACTCCAATGGCGGATTTCACTTCTTCCTCCCTCAATGCTCTTTCTCCTCCTTCCGATGATGCTTTTGAAGACGACGCTTGCTGTATTTGCCTCGATCCTTTTACCTCCCACGATCCTCCCTCTATCACCAGTTGCAAGCATGAATATCATCTCCAATGTATTCTTGATTGGTCTCAAAGAAGCAACGAGTGCCCAATCTGTTGCCAGTTGCTAGTGTTAAGGGATCCTGTTGGCCAGGAGCTTCTAGCAGCCATTGCTAGTGAAAAGCTTTTGAAGTCTAGAAGCTTGTCTTCTGTTGCATCCACTTCTTTGCGTTTCCACGAAAACTTTGATGTCGACCATGACTCCTCTCATTCAGATGACTCTGACTTTGATGACCTGATTATGCAGCATCTTGCTGCTGCAGCTAGCCGAGCTCGGTATGTTCATAGAAGGGAGAGGCAAAGACATTTTGGACTTGGACCTTCACAAGGTGTCTCTGCATGTCCAGAAGAGGTTCCAGTGCTAATATGTCCCTTGTCACCTAGATTTCAAGATGCTACTCTAAGTTCGCCTAATAGTGATTCACCATCTCCTGGTTCCCCTTTGTCGTCTGGTGGTCGAACCGGAATTAGTAAAATCTCGCCTAGGGTTTTACTGACTGAGACATTGTCGGGTAGTCAACAGAAAACAAACCAACCTGAGGGGCTTTCTTTCCCAGATTCCATCAAATCCAAATGGTCTGCTACTTCTGCAAAGTACAAGGAGTCAATATGGCGAAGCACTCAAGGTATTAAGGAGAAACTGCTTGCTCGTAACAGCTCCGTGAAGGAGCTAAGCAGAGGAGTGAAGCGTGAAGTAAGTGCTGGGATTGCTGGTGTTGCTCGAATGATCGATCGCCTAGATTTGTCTTCGAAAAGGAATGCTGCTTCTGTTTCCTTCTTCAGCTGCAGTGGAGGTACATCAAACTCCATGAAAGGAAAGAACGTAGTAATGCAAGAAAGTGGTGTCACAGATGGTTCAGTAAAAAATGACAGAATATGTACTGGTTCACCCTCACATGTTTCTCCTACCGTTCCAGGCTCAGTCAATGATTCTCTAGCTCAGAGAGGAAATTGA 2094 44.17 MDLLSKSSTHLFFDYQFGQDARSKEIEDVLILSGDHLYRMDYMDFVQNHRQSGADITLSCIPIDDRRASDFGLMKIDNSGRVLSFSEKPRGKDLKAMEVDTTVLGLSKDEALRKPYIASMGVYVFKKEILLNILRWRFPTANDFGSEIIPASAREFFMKAYLFNDYWEDIGTIRSFFEANLALTEQPPRFSFYDETKPIYTSRRNLPPTKIESCKIVDSIISHGCFLTNSFIDHSVVGIRSRINSNVHLKDTVMLGADFYETDGEVSALLAEGRVPVGIGENTKIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYIRSGGGFPFDFVGTPMADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSITSCKHEYHLQCILDWSQRSNECPICCQLLVLRDPVGQELLAAIASEKLLKSRSLSSVASTSLRFHENFDVDHDSSHSDDSDFDDLIMQHLAAAASRARYVHRRERQRHFGLGPSQGVSACPEEVPVLICPLSPRFQDATLSSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETLSGSQQKTNQPEGLSFPDSIKSKWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNAASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVNDSLAQRGN 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1350939 1361581 + CmaCh17G002630.1 Cma17g00263 312158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00263 697 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 15 204 IPR029044 -
Cma17g00263 697 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 301 IPR029044 -
Cma17g00263 697 Pfam Ring finger domain 358 399 IPR001841 -
Cma17g00263 697 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 15 323 IPR011831 GO:0005978|GO:0008878
Cma17g00263 697 Pfam Nucleotidyl transferase 23 185 IPR005835 GO:0009058|GO:0016779
Cma17g00263 697 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 118 128 IPR005836 GO:0005978|GO:0008878
Cma17g00263 697 ProSiteProfiles Zinc finger RING-type profile. 359 399 IPR001841 -
Cma17g00263 697 MobiDBLite consensus disorder prediction 661 697 - -
Cma17g00263 697 SUPERFAMILY Trimeric LpxA-like enzymes 203 324 IPR011004 -
Cma17g00263 697 CDD LbH_G1P_AT_C 207 323 - -
Cma17g00263 697 SUPERFAMILY RING/U-box 341 405 - -
Cma17g00263 697 SMART ring_2 359 399 IPR001841 -
Cma17g00263 697 Gene3D Hexapeptide repeat proteins 205 325 - -
Cma17g00263 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 404 IPR013083 -
Cma17g00263 697 MobiDBLite consensus disorder prediction 512 536 - -
Cma17g00263 697 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 15 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00263 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - csv:101204159 593.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00378 Cma-Chr14:1719473 Cma17g00263 Cma-Chr17:1350939 1.25E-42 dispersed
Cma17g00263 Cma-Chr17:1350939 Cma20g00840 Cma-Chr20:4022751 8.83E-137 dispersed
Cma17g00263 Cma-Chr17:1350939 Cma14g01686 Cma-Chr14:12543542 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g449 . . . . . Bpe14g01314 . . . Cmo17g00251 . . . . . . . . . . . . . . Cla06g00552 Cam06g0595 Cec06g0593 Cco06g0600 Clacu06g0581 Cmu06g0576 Cre06g1342 Cone14ag0830 . Cone7ag0224 Cone4ag0215 . . . . . . . . . . Bma02g00689 . . . . . Cma17g00263 . Car17g00237 Cpe12g00219 . Bhi12g01814 . . . . . . . . . . . . . Lsi09g01347 . . Cme11g01927
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005314 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 3 1 1 1 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00263 Cma_Chr17 FPKM 13.893014 13.436486 12.420082 13.346148 45.573128 46.541664 43.371681 26.234684 26.286589 28.235106