Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00264 ATGGCGTCCGCGATTCTGAAGCGAGTCAGCGCCTCCGCGAAGAGCACGCTGGTTGAATCTATGCGAAGCAGAGCGTCATCGCGAGCCTTTGCGGCGGTGGCGATCGGAACTGACATCGTTTCCGCCGCACCGAACGTTTCTCTCCAGAAGGCTCGGAGTTGGGACGAAGGTGTCTCCTCCAAGTTCTCGACGACTCCGCTTAAAGATATTTTCGAGGGCAAGAAGGTCGTCATCTTTGGGCTTCCTGGTGCATATACAGGAGTTTGTTCTCAGCAGCACGTTCCCAGTTACAAGAACAAAATTGATGAGTTCAAGGCTAAAGGAATTGATTCTGTTATTTGCGTGTCTGTTAATGATCCATATACCCTCAATGGCTGGGCTGAGAAACTTGAAGCGAAAGATGCTATACAATTTTTTGGGGACTTCGATGGAAGATTTCACAAGAGCCTGGAACTGGATAAAGATCTTTCTGTTGCTTTGCTTGGTCCTCGTTCTCAAAGATGGTCAGCATATGTTGTAGATGGCACAGTTAAGGCTCTTAACATAGAGGAAGCTCCATCCGACTTTAAGGTTACGGGGGCAGATGTCATTTTGAACCAAATTTAG 606 47.85 MASAILKRVSASAKSTLVESMRSRASSRAFAAVAIGTDIVSAAPNVSLQKARSWDEGVSSKFSTTPLKDIFEGKKVVIFGLPGAYTGVCSQQHVPSYKNKIDEFKAKGIDSVICVSVNDPYTLNGWAEKLEAKDAIQFFGDFDGRFHKSLELDKDLSVALLGPRSQRWSAYVVDGTVKALNIEEAPSDFKVTGADVILNQI 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1362733 1365008 - CmaCh17G002640.1 Cma17g00264 312159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00264 201 CDD PRX5_like 44 198 IPR037944 -
Cma17g00264 201 SUPERFAMILY Thioredoxin-like 58 191 IPR036249 -
Cma17g00264 201 Pfam Redoxin 43 194 IPR013740 GO:0016491
Cma17g00264 201 Gene3D Glutaredoxin 31 201 - -
Cma17g00264 201 PANTHER PEROXIREDOXIN-2F, MITOCHONDRIAL 1 201 - -
Cma17g00264 201 PANTHER PEROXIREDOXIN 1 201 IPR037944 -
Cma17g00264 201 ProSiteProfiles Thioredoxin domain profile. 37 201 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00264 - - - csv:101219915 363.229
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01163 Cma17g00264 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00273 Cma-Chr14:1154385 Cma17g00264 Cma-Chr17:1362733 8.47E-33 dispersed
Cma17g00264 Cma-Chr17:1362733 Cma08g01163 Cma-Chr8:7162156 1.15E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g448 . . . . . . . . Cmo08g01135 . . . . . . . . . . . . . . . Cla06g00551 Cam06g0594 Cec06g0592 . Clacu06g0580 Cmu06g0575 Cre06g1341 . . Cone7ag0223 Cone4ag0214 . . . . . . . . . . . . . . . Cma08g01163 Cma17g00264 Car08g01041 Car17g00238 Cpe12g00220 Cpe17g00132 Bhi12g01813 . . . . . . . . . . . . . Lsi09g01348 . . Cme11g01928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013072 0 1 0 0 0 1 2 1 1 1 0 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00264 Cma_Chr17 FPKM 20.388374 22.377344 24.419168 22.954937 33.958282 32.826389 34.634541 15.906935 16.187895 17.515942