Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00266 ATGTCTAAGAACCCTTCTGTGATTGATCTTGAAGCCATGCCGTTTAGTGAAGTGTTCAGTAAACTTAAGCGTTTGAGACTGTTCGAGCCCTCGCTTGGGGTTTTTGGGTTCTTTTTCGTGTCTATTTGTTTGATTTGTAGCTTTTTTTTCTTGGATTACAGAACTGCTTCAAGTAGGTTTGTGTTTCCTCTTCGATCAGAGAGATTTGTTTGGCTAAGAAACTCTAATTTTGGTCAGAATCGGACGGTTGAGTTTCTTTCTGAAGAGGGATTTGAGTGTGATTTGTTTGATGGGGATTGGGTTTGGGATGATTCTTATCCTTTGTATGAATCCAAGAACTGCCCGTTTGTTGATCAAGGCTTTCGCTGCTCTGAAAATGGCCGCCCTGATTTGTTCTACACTAAATGGAAATGGCAACCCAAATTCTGCAACCTGCCCAGGTTCAATGCAACGTTTATGTTGGAGAAAATGCAAAACAAACGGGTCGTGTTCGTCGGTGACTCAATTGGAAGGAACCAATGGGAATCACTTTTATGTATGCTATCATCTGCAGTTCCAAACAAAGAATCCATCTATGAAGTGAATGGTAGTCCAATTACAAAGCACAAGGGATTCTTGGTGTTCAAGTTCAAGGATTTCAACTGCACTGTTGAATACTACCGAGCTCCGTTTCTCGTCTTGCAGAGTCGACCTCCTTCGGGTGTTTCTCGAGAGATCAAGACGACTCTTAAGCTAGATCAGATGGATTGGTCCTCACCCAAGTGGCGAGATGCCGATGTTTTGATCTTCAACACCGGGCATTGGTGGAACTACGAGAAGACCATAAGAGGAGGCTGTTACTTCCAAGATGGGAACGAGATAAAGATGGAAATGAAGATTGAAGATGCATATCAGCAGTCGCTCAAGACCGTGATGAACTGGATCAACAACGAACTAAACTCGAACAAAACAACTGTCTTCTTCCGTATGTTCGCCCCCGTACATTTTCGAGGTGGAGATTGGAGGAATGGTGGGAGCTGTCATTTGGAAGCTCTACCGGAGCTCGGTTCTTCGTTAGTTCCTCCCGAAACCTGGTCCCATTTTCGGATAGCAAATTCCATCCTATCAGGTTACTTAGCGATGCCAAATTCAACTAAACTAGAGATATTAAATGTAACTCGAATGACTGCACAGAGAAAGGATGGGCATTCATCTCTGTACTACCTCGGTCCCGACGTCGGTCCTGCACCTCCTCATCGACAGGATTGCAGTCACTGGTGTTTGCCTGGGGTTCCTGATGTGTGGAATGAGCTTCTTTATGCATTGTTCTTGAAGCATGAATGGACCTCTTCAGCTTCTCAGGCCACTTAA 1350 44.3 MSKNPSVIDLEAMPFSEVFSKLKRLRLFEPSLGVFGFFFVSICLICSFFFLDYRTASSRFVFPLRSERFVWLRNSNFGQNRTVEFLSEEGFECDLFDGDWVWDDSYPLYESKNCPFVDQGFRCSENGRPDLFYTKWKWQPKFCNLPRFNATFMLEKMQNKRVVFVGDSIGRNQWESLLCMLSSAVPNKESIYEVNGSPITKHKGFLVFKFKDFNCTVEYYRAPFLVLQSRPPSGVSREIKTTLKLDQMDWSSPKWRDADVLIFNTGHWWNYEKTIRGGCYFQDGNEIKMEMKIEDAYQQSLKTVMNWINNELNSNKTTVFFRMFAPVHFRGGDWRNGGSCHLEALPELGSSLVPPETWSHFRIANSILSGYLAMPNSTKLEILNVTRMTAQRKDGHSSLYYLGPDVGPAPPHRQDCSHWCLPGVPDVWNELLYALFLKHEWTSSASQAT 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1367114 1370533 - CmaCh17G002660.1 Cma17g00266 312161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00266 449 Pfam PMR5 N terminal Domain 92 144 IPR025846 -
Cma17g00266 449 PANTHER - 28 441 - -
Cma17g00266 449 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 145 434 IPR026057 GO:0016740
Cma17g00266 449 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 28 441 IPR029962 GO:0016413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00266 - - - csv:101220391 864.374
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01165 Cma17g00266 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00625 Cma-Chr2:3766181 Cma17g00266 Cma-Chr17:1367114 2.13E-96 dispersed
Cma07g00837 Cma-Chr7:3888142 Cma17g00266 Cma-Chr17:1367114 3.32E-127 dispersed
Cma14g00408 Cma-Chr14:1906060 Cma17g00266 Cma-Chr17:1367114 5.98E-99 dispersed
Cma14g00933 Cma-Chr14:4845978 Cma17g00266 Cma-Chr17:1367114 2.28E-105 dispersed
Cma17g00266 Cma-Chr17:1367114 Cma08g01165 Cma-Chr8:7170051 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g444 . . . . . . . . Cmo08g01137 Cmo17g00252 . . . . . . . . . . . . . . Cla06g00550 Cam06g0593 Cec06g0590 Cco06g0598 Clacu06g0579 Cmu06g0574 Cre06g1340 Cone14ag0827 . . . . . . . . . . . . . . . . . . Cma08g01165 Cma17g00266 Car08g01042 Car17g00240 Cpe12g00221 Cpe17g00130 Bhi12g01811 . . . . . . . . . . . . . Lsi09g01350 . . Cme11g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004153 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 2 2 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00266 Cma_Chr17 FPKM 12.167747 12.616206 15.542897 16.638296 29.605101 29.77879 32.46426 5.658774 6.097363 6.187012