Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00273 ATGCATTTCTTAAATGCGGTGATGTTGACTCGAATGCTCACTCGGAATCCGGGTCTTGAATCGGAAGCCGGCGAAATTCCATTCGGATCGTTGTTGTGGATCACCTACGCCGGGATCTCTTGTGTCCTTGTTCTATTCGCCGGTATTATGTCTGGTTTGACCCTTGGCCTTATGTCTCTCGGCCTTGTCGACCTCGAAATTCTTCAACGCAGTGGCACCACCGAGGAGAAGAAACAAGCTGCGGCTATACTACCAGTGGTTCAAAAGCAGCACCAGCTTCTTGTTACATTGCTATTATGTAATGCCGTTGCAATGGAGGCACTTCCTATATACTTGGATAAACTTTTTAATCAGTATCTTGCTATTATTCTCTCTGTGACATTTGTATTGGCATTTGGAGAGGTTATACCACAAGCGATATGCACCCGGTATGGACTTGCTGTCGGTGCCAATTTTGTGTGTCTTGTACGAGTTTTGATGGTTATTTGCTACCCAATTGCATATCCCATCGGGAAGGTTCTTGATTGCTTGCTGGGGCACAATGAGGCATTGTTTAGGCGTGCTCAATTGAAAGCTCTTGTCTCCATCCACAGTCTGGAGGCGGGAAAGGGTGGTGAACTCACCCATGATGAAACAACAATCATTAGTGGAGCTTTAGATTTGACTGAAAAGACAGCTGAGGAGGCCATGACACCTATTGAATCAACTTTTTCCTTGGACGTAAATTCAAAATTGGACTGGGAAGCAATGGGAAAAATTCTTGCTCGTGGTCATAGTCGAGTTCCTGTCTACGCTGGGAATCCAAAGAATATTATAGGGCTTCTCCTGGTGAAAAGCCTTTTAACAGTGCGACCTGAAACAGAGACCCCAGTCAGTGCCGTTTCTATTCGGAGGATTCCCAGGGTTCCTTCCGACATGCCTCTTTATGATATATTGAACGAATTTCAGAAAGGGAGTAGTCACATGGCTGCTGTTGTGAAGGTAAAAGGGAAAAACAAGGCTCTTCCTCCTACATTGGTTGGAGAAGAATCTGAGGAAAATAAACTCTCAGGCATGGATTCCCAACTGACAACTCCTTTACTACGTAAGCATGACGAGAATTCAGATAGTGTAGTTCTCGATATCGATAGAACTTCCAAGACTTCTGGTATGAGTAGGCAACCTTCTTACCGACGCAATGATGCTTCTTCTATAAATGGGGTGAGCCATTTATCAGAGGATATAGAAGATGGTGAAGTAATTGGTATCATCACCCTTGAAGATGTATTTGAAGAACTTTTGCAGGAGGAGATTGTTGACGAAACAGATGAGTATGTTGATGTTCACAAAAGAATTCGTGTTGCTGCAGCTGCGGCTGCTTCCTCTATGGCAAGAGCTCCATCAATTAGGAGATTAACCGCTCAGAAGGGAGCTCAAACTAAACAGGTCCAAACATCGAAGAAGTCTACCGAGGAGGAATCAAATCCTGCGAAATCTCCAGGAACCAAGTCTTGA 1494 44.44 MHFLNAVMLTRMLTRNPGLESEAGEIPFGSLLWITYAGISCVLVLFAGIMSGLTLGLMSLGLVDLEILQRSGTTEEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFNQYLAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRVLMVICYPIAYPIGKVLDCLLGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYAGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLVGEESEENKLSGMDSQLTTPLLRKHDENSDSVVLDIDRTSKTSGMSRQPSYRRNDASSINGVSHLSEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAPSIRRLTAQKGAQTKQVQTSKKSTEEESNPAKSPGTKS 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1418758 1424052 + CmaCh17G002730.1 Cma17g00273 312168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00273 497 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 2 483 IPR045095 GO:0010960
Cma17g00273 497 Gene3D - 211 352 IPR046342 -
Cma17g00273 497 CDD CBS_pair_CorC_HlyC_assoc 225 330 IPR044751 -
Cma17g00273 497 Gene3D - 389 434 IPR046342 -
Cma17g00273 497 ProSiteProfiles CNNM transmembrane domain profile. 29 211 IPR002550 -
Cma17g00273 497 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 2 483 - -
Cma17g00273 497 SUPERFAMILY CBS-domain pair 215 428 IPR046342 -
Cma17g00273 497 MobiDBLite consensus disorder prediction 456 497 - -
Cma17g00273 497 Pfam Cyclin M transmembrane N-terminal domain 39 207 IPR002550 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00273 K16302 CNNM; metal transporter CNNM - csv:101215393 859.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01171 Cma17g00273 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01686 Cma-Chr11:11120800 Cma17g00273 Cma-Chr17:1418758 5.20E-100 dispersed
Cma16g00096 Cma-Chr16:430111 Cma17g00273 Cma-Chr17:1418758 1.10E-139 dispersed
Cma17g00273 Cma-Chr17:1418758 Cma19g00517 Cma-Chr19:6055358 1.69E-150 dispersed
Cma17g00273 Cma-Chr17:1418758 Cma19g00052 Cma-Chr19:290976 0 wgd
Cma17g00273 Cma-Chr17:1418758 Cma08g01171 Cma-Chr8:7209028 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g425 . . . Bda08g00390 Bpe04g01193 Bpe14g01325 Bma04g01184 Bma05g00943 Cmo08g01144 Cmo17g00260 . . . . . . . . . . . . . . Cla06g00543 Cam06g0586 Cec06g0583 Cco06g0591 Clacu06g0573 Cmu06g0567 Cre06g1333 Cone14ag0819 Cone15ag0815 . . . . Chy11g01433 . . . . . Bpe05g00754 . . . . . . Cma08g01171 Cma17g00273 Car08g01049 Car17g00248 Cpe12g00226 Cpe17g00123 Bhi12g01796 . . . . . . . . . . . . . Lsi09g01359 . . Cme11g01938
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001077 3 9 2 2 3 2 3 2 2 2 2 2 3 1 1 3 2 4 3 2 2 2 2 2 2 2 2 9 2 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00273 Cma_Chr17 FPKM 12.752125 17.720831 15.578038 17.0179 14.239716 12.820457 15.199984 13.336802 12.105588 12.113285