Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00276 ATGCTCGTTTTTGCGATACCAAAATTGTTCTCTCGACGTATTACGATTCCTCTTTCATTTACTCCGCTTTATCCCAAATGGGTTTCCTCCTTCTCCACAATCGGACCTTCTTCACGGCCCCTCCACAATCTTACCTCATTCTTCAATGGCAGACCTTCAGGCAACTGCTTGGATTACGAGCTCTCCTTGGTCTCAGCTTTGAAGTCCTGCGCATCTAGCTCAGCTATTTTTCAAGGGCAGCAAATCCATGCCACCGTCCTCAAATCTGGGTTTGATTCCAATACTTTCATCCTTAATAGCTTGATTAATATGTATGCCAAATGTGGACATATTGCCGATGCCAGATTGTTGTTTGATTCGTGTTCTGGCCTGGATTCTGTATCTTGTAACATCATGTTATCTGGGTATGTTAAACTTCGCCAATTGGAGAACGCACGCCACCTGTTCGACAAAATGCCTGAAAGAGGATGCGTCTCTTACACCACCATGATTTTGGGTTTGGCACAGAATGATTGTTGGAGGGAAGCAATTGAGATTTTCAAGGATATGAGGTCTGCAGGTGTGGCCCCAAATGAAGTGACAATTGCAAGTGTCATGTCAGCATGTTCACATATTGGTGGGATTTGGAATTGCTTGATGCTCCATGCACTGGTAATAAAGCTACATTTCATTGGTCTTGTTCTTATTTCCACAAATTTGCTGCACATGTATTGTGTTTGTTCAAGTTTAAAAGATGCTAGGAGGTTATTCAATGAGATGCCAGTGCGTAATACTGTTTCATGGAATGTGATGTTAAAAGGGTATGTAAAATCAGGCCTTGTTGATAAAGCAATAGAGTTGTTTGATAGGATCCCAGAAAAAGATGTGATTTCTTGGGCTACAATGATTGATGGGTTTGTGCAAGTGAAACAATTAAGGGAAGCTTTGTCGATGTTTTCTGCAATGAGAAAAAGTGATCTTCACCCCAATGAAGTGATGATTGTTGATTTGCTTTCTGCTTGTGGGCAGTCAATTTCAATTGATGAGGGCAGGCAGCTCCATTCAATCATAGTGAAAACTGGTTTTGATTGTTATGATTTCATGCAAGCAACTCTCATTAGTTTCTATTCAGCTTGTGGAAGGATTGAGCTTGCTAATTTGCAGTACCAGGTGAGTGATAAGAGTCATCTCGCAACTTCAAATGCCCTTATTGTGGGCTTCATGAAGAACAGAATGATTGATCAAGCAAGGCAAATATTTGATGTGATGCCTGAAAAAGATGTGTTTTCATGGAGCACCATGATTTCTGGTTATGCACAGAATGAGTTACCTGATGTGGCTTTAGAGCTTTTCCATGGAATGGTGGTCAGAGGTGTCGTGGCGAACGAGATCACCATGGTTAGTGTTTTCTCAGCCATTGCAGCTTCAGGTAAACTGGCAGAAGGAAGATGGGCGCATGAGTATGTTTGCAACAAAGCCATTCCTCTTAATGATAATTTGAGTGCTGCAGTCATTGACATGTATGCCAAATGTGGAAGTATCAGCACTGCCATGAATGTGTTTTATCAGATCAGAGACAAGGCCTCCACAGTCTCACCGTGGAACGCCGTCATATGTGGATTGGCGATGCATGGGCATGCGAATTTGTCTCTTGAAATCTTTTCCGACTTGCAAAGACGTAGTATCAAGCTCAACTCGATCACATTCCTCGGGGTCCTTGGTGCTTGTTGCCATGCTGGTTTGGTTGAGCTTGGGGAGAGATATTTCTGGAGCATGAAGAGTGTATATGGCGTAGAACCAAACATTAAGCATTATGGGTGTCTAGTCGATCTGTTAGGCAGAGCTGCCCGATTAAGGGAAGCGGAGGAAACTATAAGAACCATGCCAATGAAGGCAGATGTTGTGATATGGGGCACATTATTGGCAGCTTGCCGAACACATGGGGAAGTCGAAATAGGTGAAAGAGCTGCAGAGAATTTAGCTAGATTGGAACCATCCCACGGGGCAGGTCGAGTCCTCCTGTCGAACTTATACGCCGATGCAGGGTTATGGGAGGATGCATCCTTGGTGAGGAGAGCAATGCAAAGTCAAAGGATGATAAGATCACCTGGGTGCAGTGGTGTTGTATGA 2109 43.48 MLVFAIPKLFSRRITIPLSFTPLYPKWVSSFSTIGPSSRPLHNLTSFFNGRPSGNCLDYELSLVSALKSCASSSAIFQGQQIHATVLKSGFDSNTFILNSLINMYAKCGHIADARLLFDSCSGLDSVSCNIMLSGYVKLRQLENARHLFDKMPERGCVSYTTMILGLAQNDCWREAIEIFKDMRSAGVAPNEVTIASVMSACSHIGGIWNCLMLHALVIKLHFIGLVLISTNLLHMYCVCSSLKDARRLFNEMPVRNTVSWNVMLKGYVKSGLVDKAIELFDRIPEKDVISWATMIDGFVQVKQLREALSMFSAMRKSDLHPNEVMIVDLLSACGQSISIDEGRQLHSIIVKTGFDCYDFMQATLISFYSACGRIELANLQYQVSDKSHLATSNALIVGFMKNRMIDQARQIFDVMPEKDVFSWSTMISGYAQNELPDVALELFHGMVVRGVVANEITMVSVFSAIAASGKLAEGRWAHEYVCNKAIPLNDNLSAAVIDMYAKCGSISTAMNVFYQIRDKASTVSPWNAVICGLAMHGHANLSLEIFSDLQRRSIKLNSITFLGVLGACCHAGLVELGERYFWSMKSVYGVEPNIKHYGCLVDLLGRAARLREAEETIRTMPMKADVVIWGTLLAACRTHGEVEIGERAAENLARLEPSHGAGRVLLSNLYADAGLWEDASLVRRAMQSQRMIRSPGCSGVV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1442955 1445063 + CmaCh17G002760.1 Cma17g00276 312171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00276 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Cma17g00276 702 Pfam Pentatricopeptide repeat domain 546 606 IPR002885 -
Cma17g00276 702 Gene3D Tetratricopeptide repeat domain 59 223 IPR011990 GO:0005515
Cma17g00276 702 Gene3D Tetratricopeptide repeat domain 492 699 IPR011990 GO:0005515
Cma17g00276 702 Pfam PPR repeat family 419 465 IPR002885 -
Cma17g00276 702 Pfam PPR repeat family 158 203 IPR002885 -
Cma17g00276 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Cma17g00276 702 PANTHER - 387 700 - -
Cma17g00276 702 PANTHER - 61 137 - -
Cma17g00276 702 PANTHER - 130 284 - -
Cma17g00276 702 PANTHER - 268 380 - -
Cma17g00276 702 Pfam E motif 640 701 IPR046848 -
Cma17g00276 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 190 IPR002885 -
Cma17g00276 702 Pfam PPR repeat 231 256 IPR002885 -
Cma17g00276 702 Pfam PPR repeat 127 157 IPR002885 -
Cma17g00276 702 Pfam PPR repeat 259 288 IPR002885 -
Cma17g00276 702 Pfam PPR repeat 98 119 IPR002885 -
Cma17g00276 702 Pfam PPR repeat 496 519 IPR002885 -
Cma17g00276 702 Pfam PPR repeat 290 319 IPR002885 -
Cma17g00276 702 TIGRFAM PPR: pentatricopeptide repeat domain 127 158 IPR002885 -
Cma17g00276 702 TIGRFAM PPR: pentatricopeptide repeat domain 259 288 IPR002885 -
Cma17g00276 702 TIGRFAM PPR: pentatricopeptide repeat domain 422 455 IPR002885 -
Cma17g00276 702 TIGRFAM PPR: pentatricopeptide repeat domain 290 324 IPR002885 -
Cma17g00276 702 TIGRFAM PPR: pentatricopeptide repeat domain 158 192 IPR002885 -
Cma17g00276 702 Gene3D Tetratricopeptide repeat domain 342 487 IPR011990 GO:0005515
Cma17g00276 702 Gene3D Tetratricopeptide repeat domain 225 341 IPR011990 GO:0005515
Cma17g00276 702 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00276 - - - csv:105435822 1181.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00276 Cma-Chr17:1442955 Cma10g00565 Cma-Chr10:2591943 6.89E-30 dispersed
Cma17g00276 Cma-Chr17:1442955 Cma08g01174 Cma-Chr8:7222804 4.01E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00276 Cma_Chr17 FPKM 7.722617 8.173204 8.989249 8.990785 11.328022 13.255951 10.503709 5.444181 5.369521 6.33111