Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00277 ATGGCGGTAGCTGTTCATAACAGTTTTTGGGACAGAGTTACAGAGCTAACCAAGGTGGCTCAGCAAAAGGGAGTTGATCCTCTGCATTGGGCCATTCAGTTGTCTTCAAATTTGAACTCGTCGGGAGTCGTTTTGCCGTCAGTTGAGCTCGCTAACGTGCTGGTTTCGCACATTTGTTGGGATAATAATGAGCCTGTTTCATGGAAGTTCCTTGAGAAGGCGTTGATGTTGAATATCGTACCCCCAATTCTTGTTCTTGCCTTGCTCGCAACCAGGGTCATTTCAAGAAGACAATTCCAGCCAGTAGCATATAGGCTCTATTTGGAACTTCTTCGAAGACACGCTTTTAAGCTGAAATCTCATATCCATGGCCTCAAATACAAAGAGGTCATGGCATCTGTTGATGCTGTTCTTCGTCTTTCTGAGACATTCAATTTGCCAGCAGATGATCCTGGGACCCTTGTGGTTGAGTATATATTTTCAATTGTCTGGAAGTTGCTTGATGCAACACTTACTGATGAAGGGTTATTGGATCTTATTGTGGAAGAGAAATCCAAATGGCCAACAGAACCTCAAGAAATGGAACTAGATGGTCACAATGGTTATGATGATAAATGGACTGAACAACGTGAGAGATTGCAGAATGTAAATGTTGAACTGACAATTGAGATAATTGGGAAATTTCTTCAAGATGCGGTTACTTCAAGGATTCTCCACTTGGCTTGCAGGAATATGCCTTCACATTGGGCAGATCTTATTCAGAGACTCCAGTTGCTTGGAGAAAATTCTTCGGTATTGAGAAAGTCAAAATCTCTGAACTCAGAGATTTTTCTGCAGTTCGATACTTGGACAATCTTCTCTCAAGAATTTAAAAAAAATTCACAGAAGAAGTTCCATCCAATTAGAGCTTTTGGATCTCCGGCAGCTTCTGCTAGTTTGTGTCATAGAACTCGTTATTCTGCACTTTGGCTTCCACTTGATCTAGTTCTAGAAGATGCAATGGATGGATATCAAGTAGAAGCAACAAGTGCTATTGAAAAAATTACGAGTTTGGTCAAAACCCTTAAGGCAATAAATGGAACCAGTTGGCATGATACCTTCTTGGGTCTCTGGATAGCAGCTCTTCGCCTTGTTCAAAGGGAAAGGGATCCCATCGAGGGGCCTGTGCCTCGCATAGACACTCGTCTATGCCTTCTATTGTGTATCACAGTCCTTGTGATTGCTGATCTGATTGAGGAGGAGGAAAGTACGACAATTGATGAAACAGAGTGTGGTGCATCCAATCACTGGAAAGAAAAGAAGGCCCCTGGAAAGTGTCGGAATGAACTAATTTCTAGCCTACAGATATTGGGGGAATATCAGAGTTTGCTGACTCCTCCCCAGGGTGTTATCTCTGCATGCAATCAGGCGGCTGCCAAAGCAATGATGTTTATATCTGGAATCAGTGTTAGTAATGCATATTTTGAATGCATCAATATGAAAGATATGCCAATGAACTCTTCAGCTGGAAATATGCGTCATTTGATAGTTGAAGCTTGCATTGCAAGAAATCTCCTGGATACATCTGCATATTTTTGGCGAGGCTATGTGAACGGTTGCATTAATCAAATGCCTCAAAGTATACCACCCCAAGCACCTGGTTGGTCAGCTTTCGTGAAGGGGGCTCCACTTAATCATATAATGATAAAGGTCTTAACTTCAACTCCTGCTTCAAGCTTAACTGAACTGGAGAAAATATTTGAGATAGCAGTAAAAGGATCAGATGAAGAGAAGATATCTGCAGCAACCATTCTTTGTGGGGCTTCCTTGATCCGAGGCTGGAATATTCAGGAACATACTGTCCATTATATTACTAGGTTACTTTCTCCTCCAGTTCCCAAAGATTACTCTGGATGTGAAAGTCATTTGATAGGCTATGCTCCAATGCTGAATGTGCTTATTGTTGGAATAGCATCTATTGATTGTGTTCAGATTTTTTCTCTTCATGGTTTGGTTCCACAGCTTGCTTGTTCACTGATGCCAATCTGCGAGGTTTTCGGATCGTGTGTGCCAAACCTCAATTGGACCTTAACAACAGGGGAGGAAATCTCTGCTCATGCCGTGTTTTCAAATGCATTTACTCTTCTCTTAAAGCTTTGGAGATTTAACCATCCTCCTCTAGACCATGGAGTGGGTGATGCACCTACAGTTGGATCTCAACTTACTCCAGAATATCTACTATTAGTGAGAAATTCCCATCTAGTATCTGGAAATGTCCACAAAGATCGCAATAAAATGAGACTTTCAGCTGTGGCAAGTTCCTCTTCCCCTCAACCAATATTTGTAGACTCATTTCCTAAATTGAAAGTCTGGTATCGACAACATCAAGCATGTATAGCGTCAACCCTCTCGGGTCATGTTCATGGCAACCCAGTTCATCAGACTGTTGATGGACTTCTTAACATGATGTTTCGAAGAATTAATGGGGGAAATCAACCTTTAACTTCAGTTACTTCTGGAAGCAGTAGTTCTTCTGGGCCTGGAAATGAAGATTCTTCTTTAAGACCTAAATTGCCTGCCTGGGATATAATGGAAGCTGTTCCTTTTGTGATTGATGCTGCTCTAACAGCCTGTGCTCATGGAAAGCTTTCTCCTCGTGAGTTGGCTACAGGACTTAAAGATCTAGCAGATTTTCTACCAGCATCTTTAGCAACCATAGTGAGCTACTTTTCTGCAGAAGTAACTCGGGGATTATGGAAACCTGTTTTTATGAATGGATCAGATTGGCCAAGCCCAGCAGCAAATCTTTCTAATGTTGAAGAGCAGATCAAGAAAATCCTAGCTGCTACTGGCGTTGATGTCCCTAGCCTGGCTGCAGGGGGAAGTTCTCCAGCCACACTTCCTCTGCCCTTAGCTGCCTTTGTAAGCCTTACTATAACCTACAAAATAGACAGAGCATCCGAACGTTTCCTCAATTTGGCTGGCCCGGCCTTGGAGTCTCTTGCAGCTGGTTGCCCCTGGCCATGCATGCCAATTGTTGCTTCCTTGTGGACTCAAAAAGCCAAACGTTGGAGTGATTTCCTGGTCTTTTCAGCATCTCGTACAGTTTTCCTTCAGAATTGCGATGCTGTGGTTCAGCTTCTCAAAAGCTGCTTCACTGCCACCCTTGGCCTAACTGCCAATCCCCTCTCAAATCATGGGGGTGTTGGGGCCCTTCTTGGCCACGGATTTGGATCTCATTTCTGTGGTGGGATTTCTCCTGTTGCTCCAGGAATTCTTTTTTTACGTGTCTACCGATCAATTAGAGACGTCGCACTATTGGTTGAAGAGATTCTCTCTCTTCTGATGGATTCTGTACGAGAAATAGCTTGTAACGGTGCTCGAAAAGAGAGATCAGGGAAACTGAGAACAACCAATAACGGAAAAAGATATGGACAGATTTCACTATCTTCAGCAATGATTCAAGTAAAGCTTGCAGCTTCCCTTGGAGCTTCATTAGTATGGCTATCAGGCGGTTTAGTATTGGTTCAATCTGTGATAAAAGAAACATTGCCTTCTTGGTTCATTTCAGTTCACAGGTCCGAGCAAGAGGAATGTTCAGAGGGGATAGTTTCCATGCTTGGGGGATATGCATTAGCTTACTTTGCAGTGTTATGTGGGGCTTTTGCTTGGGGCACTGACTCTTCATCATCTGCATCAAAGAGGCGTCCCAAAATCCTAGGTGTTCATATGGAGTTTCTTGCAAGTGCCCTCGACGGAAAAATATCACTAGGTTGTGATTGGGACACATGGCGTGCCTACGTGACCGGGTTCGTGAGCCTAATGGTTGGTTGCACACCGAGCTGGGTTCTTGACGTAGATGTAGAAGTATTGAAACGATTGAGTAATGGACTCAAGCTATGGAACGAAGAAGAGCTTGCTCTTGCATTGCTTGGACTTGGTGGGGTTGGTACCATAGGTGCAGCTGCTGAACTGATAATTGAAAGTGAGACTTGA 3975 43.3 MAVAVHNSFWDRVTELTKVAQQKGVDPLHWAIQLSSNLNSSGVVLPSVELANVLVSHICWDNNEPVSWKFLEKALMLNIVPPILVLALLATRVISRRQFQPVAYRLYLELLRRHAFKLKSHIHGLKYKEVMASVDAVLRLSETFNLPADDPGTLVVEYIFSIVWKLLDATLTDEGLLDLIVEEKSKWPTEPQEMELDGHNGYDDKWTEQRERLQNVNVELTIEIIGKFLQDAVTSRILHLACRNMPSHWADLIQRLQLLGENSSVLRKSKSLNSEIFLQFDTWTIFSQEFKKNSQKKFHPIRAFGSPAASASLCHRTRYSALWLPLDLVLEDAMDGYQVEATSAIEKITSLVKTLKAINGTSWHDTFLGLWIAALRLVQRERDPIEGPVPRIDTRLCLLLCITVLVIADLIEEEESTTIDETECGASNHWKEKKAPGKCRNELISSLQILGEYQSLLTPPQGVISACNQAAAKAMMFISGISVSNAYFECINMKDMPMNSSAGNMRHLIVEACIARNLLDTSAYFWRGYVNGCINQMPQSIPPQAPGWSAFVKGAPLNHIMIKVLTSTPASSLTELEKIFEIAVKGSDEEKISAATILCGASLIRGWNIQEHTVHYITRLLSPPVPKDYSGCESHLIGYAPMLNVLIVGIASIDCVQIFSLHGLVPQLACSLMPICEVFGSCVPNLNWTLTTGEEISAHAVFSNAFTLLLKLWRFNHPPLDHGVGDAPTVGSQLTPEYLLLVRNSHLVSGNVHKDRNKMRLSAVASSSSPQPIFVDSFPKLKVWYRQHQACIASTLSGHVHGNPVHQTVDGLLNMMFRRINGGNQPLTSVTSGSSSSSGPGNEDSSLRPKLPAWDIMEAVPFVIDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGLWKPVFMNGSDWPSPAANLSNVEEQIKKILAATGVDVPSLAAGGSSPATLPLPLAAFVSLTITYKIDRASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLQNCDAVVQLLKSCFTATLGLTANPLSNHGGVGALLGHGFGSHFCGGISPVAPGILFLRVYRSIRDVALLVEEILSLLMDSVREIACNGARKERSGKLRTTNNGKRYGQISLSSAMIQVKLAASLGASLVWLSGGLVLVQSVIKETLPSWFISVHRSEQEECSEGIVSMLGGYALAYFAVLCGAFAWGTDSSSSASKRRPKILGVHMEFLASALDGKISLGCDWDTWRAYVTGFVSLMVGCTPSWVLDVDVEVLKRLSNGLKLWNEEELALALLGLGGVGTIGAAAELIIESET 1324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1445210 1457043 - CmaCh17G002770.1 Cma17g00277 312172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00277 1324 Coils Coil 1315 1324 - -
Cma17g00277 1324 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 33A 8 1321 - -
Cma17g00277 1324 MobiDBLite consensus disorder prediction 827 844 - -
Cma17g00277 1324 PANTHER OS07G0681500 PROTEIN 8 1321 IPR039638 GO:0016592|GO:2000762
Cma17g00277 1324 MobiDBLite consensus disorder prediction 827 848 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00277 - - - csv:101216833 2435.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01175 Cma17g00277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00009 Cma-Chr19:58051 Cma17g00277 Cma-Chr17:1445210 0 transposed
Cma19g00010 Cma-Chr19:65112 Cma17g00277 Cma-Chr17:1445210 0 transposed
Cma17g00277 Cma-Chr17:1445210 Cma08g01175 Cma-Chr8:7224699 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g421 . . . Bda08g00388 . . . Bma05g00941 Cmo08g01146 Cmo17g00264 . . . . . . . . . . . . . . Cla06g00539 Cam06g0580 Cec06g0577 Cco06g0585 Clacu06g0567 Cmu06g0561 Cre06g1329 Cone14ag0817 . . . . . Chy11g01437 . Blo02g00645 . . . Bpe05g00752 . . . . . . Cma08g01175 Cma17g00277 Car08g01052 Car17g00252 Cpe12g00230 Cpe17g00120 Bhi12g01790 . . . . . . . . . . . . . Lsi09g01363 . . Cme11g01942
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000935 2 5 3 3 3 3 3 3 3 2 2 2 4 2 2 3 3 6 3 3 2 2 2 2 2 3 2 3 4 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00277 Cma_Chr17 FPKM 10.102145 10.602368 6.068845 5.916196 10.054031 9.025472 8.891462 1.35122 1.284528 1.43643