Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00278 ATGCAGTCGTCTATAGATGTGGATTTCTTCACTGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAGGGAAGTTATGGGGTTGTGTGCTCTGCATATGATACTCACATTGGGGAGAAAGTTGCTATTAAGAAGATCAACGACATCTTTGAGCATGTCTCCGATGCAACTCGAATTCTTCGTGAGATAAAACTTTTAAGACTGTTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTATTACCTCCATCTAGAAGAGAATTCAAGGACATTTATGTCGTGTTTGAGCTCATGGAATCTGATCTACACCAAGTTATCAAAGCAAACGATGATTTGACTCCGGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGAGGCTTGAAATATATACACACAGCTAATGTCTTCCACCGGGACCTAAAACCCAAAAATATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTCGGTCTGGCAAGAGTTGCTTTTAATGATACCCCTACTGCTATTTTCTGGACAGATTATGTAGCTACAAGGTGGTACAGAGCTCCTGAACTGTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATTGGTTGCATCTTTGCGGAGCTCTTAACTGGAAAACCACTTTTCCCTGGAAAGAACGTCGTCCACCAATTAGATTTGATGACAGATTTTCTGGGAACCCCAAATGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATACTTGAGCAGTATGCGAAAGAAGAAACCGGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCGCTTGTTGGAAAGAATGTTAGCTTTCGAGCCAAAGGATCGACCTACAGCGGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTAACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGGGAGATTCTCGAGTACCATCCAAAGATGTTGAAGGAATTCTTAGATGGATCTGAACCTACTGGTTTCATGTATCCAAGTGCCGTTGACCATTTTAAGAAGCAATTTGCCTTCCTTGAAGAACACTACGGAAATGGTGCAACTGTTGCTCCTCCTGAAAGGCAGCATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAACACGGTGCAGAACTCGGCACAAATTGCAAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTTGACTAGAGTTCCTATTCAAGTTCCTCAGTCTATTCAAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCAATGTATTACGATACAACTGTGGAGCAACAGCAGCATCAGCAGTGGCACCAGAAGTTCTGGAACAGCGGAGGATGATCAGAAACCCGTCCATTCCACCACCATACGCCGCTACTAACTGTTCGTATCCCAGACGAAACCCATCCTGTAAAAATGAAAGGACTGATGATGAAGCCATTGAAGGTTCAAATGGGTTGCAGCCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1683 43.2 MQSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHIGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNTVQNSAQIANDLSKCSIKEVERPQVDRTCNIPLTRVPIQVPQSIQGNGARPGKVVGNVLRYNCGATAASAVAPEVLEQRRMIRNPSIPPPYAATNCSYPRRNPSCKNERTDDEAIEGSNGLQPKPQYIARKVAAAQGGPGNNWY 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1464912 1470200 + CmaCh17G002780.1 Cma17g00278 312173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00278 560 CDD STKc_TDY_MAPK 18 355 - -
Cma17g00278 560 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00278 560 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 473 - -
Cma17g00278 560 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma17g00278 560 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Cma17g00278 560 Gene3D Transferase(Phosphotransferase) domain 1 105 333 - -
Cma17g00278 560 Gene3D Phosphorylase Kinase; domain 1 34 355 - -
Cma17g00278 560 SMART serkin_6 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00278 560 MobiDBLite consensus disorder prediction 502 538 - -
Cma17g00278 560 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00278 560 SUPERFAMILY Protein kinase-like (PK-like) 16 314 IPR011009 -
Cma17g00278 560 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 473 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01177 Cma17g00278 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00324 Cma-Chr10:1489796 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma11g00304 Cma-Chr11:1510304 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma11g01956 Cma-Chr11:12834957 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma13g00998 Cma-Chr13:7716467 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma17g00278 Cma-Chr17:1464912 Cma20g00258 Cma-Chr20:1252413 0 dispersed
Cma18g00063 Cma-Chr18:268209 Cma17g00278 Cma-Chr17:1464912 0 dispersed
Cma17g00278 Cma-Chr17:1464912 Cma08g01177 Cma-Chr8:7244497 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69224 PF00069 Pkinase 3.40E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00278 - K04371 csv:101216364 1089.33