Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00280 ATGGAGCAGCTGATCAACTTCATCATTCGTCCACCGAGAGCTGAATATGACCCGAACAATGATTTATTAGAAGATGAGTTCACGCTTCGAGGAAAATTGTATCAAAGGAAGGATCTGGAGGTTAAAAACACTCGGGGAGATGTACTTCAGTGTAGTCATTACTTGCCTATTGTTAGTCCTGAAGGAAAGCCTCTACCCTGTGTAATTTACTGCCATGGTAACAGTGGGTGTCGAGCAGATGCCAGTGAGGCTGCCATAATATTACTGCCTTCTAACATCACCGTGTTTGCTCTTGATTTTTCTGGTTCTGGACTTTCTGGGGGTGAGCATGTTACATTGGGGTGGAATGAAAAGGATGATCTGAAAGCCGTGGTTGAGTATTTGCGAGCAGATGGAAACGTCTCTTTAATTGGCTTATGGGGCCGTTCTATGGGTGCTGTTACCAGCCTAATGTATGGGGCTGAGAATCCTTCAATTGCAGGGATGGTTCTGGACAGTCCTTTCTCTGATCTGGTTGAGCTAATGATGGAACTTGTAGAAACCTATAAGTTTCGTTTACCTAAATTCACGGTGAAGTTTGCTATTCAATACATGAGAAGGGCTATCCAGAAAAAGGCAAAATTTGACATTATGGACCTCAACACCATTAAGGTGGCAAAATCTTGCTTTGTACCAGTGTTAATTGGGCATGCCATCGACGATGACTTCATACGGCCTCATCACTCAGACCAAATACATGATGCCTATGTGGGGGACAAAAACATTATCAAGTTCGATGGTGATCACAATTCTCCTCGCCCTCAATTTTACTTCGATTCTATAAATATTTTCTTCCACAATGTTTTGCAACCCCCAGAGGATGAAATAGGGGATATTTATATCAACACCATGCCATCCTACTTCAGTGACAAGGATTATTGGAGACCGATGCAAGAAGCGGGCCCAAACCATGGTTCCTCTACAATATCAAGAGATATACCAACTAATAGTACGGAAGGTGCTATTAAAGAACTCCGTTCAAAAAGATCTATGAGTCGGACAGAGGTTCCTGCCGATCTTCCTTCTGGAGATCATCAATCCCTATCTCAGGATCAAAGTACGAGTAATGACACGGACTTGTCATCTTCAAATATGATTAGTTTTGAATTGTCGAATGGCCATCCTTACGAAACCAATGTTCCAAATTTGATGGATGATGATCAGTATGTCGAATATCCTCTTGATGACTTGGCAGGGTTCCCATGCAGTGCAGAGGAGGAAGAAAGGATGCTCATGGAAGCAGTGATGGAATCGTTGAAGGATTTCAAAATGAAAAACGCTCAAGAAGAAGAGCAAGCTTCGAGTGTCATATGTACCGACACGAAGGACGTTTTACAGAAAGACGAAAGTGGAATTTCACGAATAGACCATTGTGGAGTGCTGCATCCAGAAGCCACATCCACTTCAAATGACCATTTTTCTCAGTTTAAAGCAGAATCTGCTTCAACTTCAGAAGAGTACAGTATATCTATTAAACCAGAATCTACTTCAGTAGTTCGAGATTCGAATTCGGTATCTGATCGCTCGTGTTCCGATAAAAGCGAATCTTCTATAGGGGTGCCTGCACCTGCTGGAACTGAAAGTGCAGGGGCTTCCTCTTGTAGTAATACACCTGCAAGTAGCCAACGTTCAGCTGAAGCTGATTTGTCAGCCAACACGAAGGCGACCGTAACTGTTGTCCGAAATCCTGCAACCCATATTATGGATGGTTTGATTCGTCGCTGGGATCTCAATTTCTTCCGAAACAATCAGAACCGATGA 1800 43.0 MEQLINFIIRPPRAEYDPNNDLLEDEFTLRGKLYQRKDLEVKNTRGDVLQCSHYLPIVSPEGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFALDFSGSGLSGGEHVTLGWNEKDDLKAVVEYLRADGNVSLIGLWGRSMGAVTSLMYGAENPSIAGMVLDSPFSDLVELMMELVETYKFRLPKFTVKFAIQYMRRAIQKKAKFDIMDLNTIKVAKSCFVPVLIGHAIDDDFIRPHHSDQIHDAYVGDKNIIKFDGDHNSPRPQFYFDSINIFFHNVLQPPEDEIGDIYINTMPSYFSDKDYWRPMQEAGPNHGSSTISRDIPTNSTEGAIKELRSKRSMSRTEVPADLPSGDHQSLSQDQSTSNDTDLSSSNMISFELSNGHPYETNVPNLMDDDQYVEYPLDDLAGFPCSAEEEERMLMEAVMESLKDFKMKNAQEEEQASSVICTDTKDVLQKDESGISRIDHCGVLHPEATSTSNDHFSQFKAESASTSEEYSISIKPESTSVVRDSNSVSDRSCSDKSESSIGVPAPAGTESAGASSCSNTPASSQRSAEADLSANTKATVTVVRNPATHIMDGLIRRWDLNFFRNNQNR 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1475613 1487371 - CmaCh17G002800.1 Cma17g00280 312175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00280 599 Coils Coil 425 445 - -
Cma17g00280 599 Gene3D alpha/beta hydrolase 10 277 IPR029058 -
Cma17g00280 599 MobiDBLite consensus disorder prediction 356 381 - -
Cma17g00280 599 MobiDBLite consensus disorder prediction 314 334 - -
Cma17g00280 599 MobiDBLite consensus disorder prediction 308 381 - -
Cma17g00280 599 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 594 - -
Cma17g00280 599 SUPERFAMILY alpha/beta-Hydrolases 11 289 IPR029058 -
Cma17g00280 599 MobiDBLite consensus disorder prediction 497 563 - -
Cma17g00280 599 PANTHER ALPHA/BETA-HYDROLASE 1 594 - -
Cma17g00280 599 Pfam Serine aminopeptidase, S33 64 176 IPR022742 -
Cma17g00280 599 MobiDBLite consensus disorder prediction 541 563 - -
Cma17g00280 599 MobiDBLite consensus disorder prediction 497 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00280 - - - csv:101215845 1077.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01179 Cma17g00280 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00612 Cma-Chr3:5375596 Cma17g00280 Cma-Chr17:1475613 6.97E-152 dispersed
Cma17g00280 Cma-Chr17:1475613 Cma04g02036 Cma-Chr4:13173739 8.74E-06 dispersed
Cma17g00280 Cma-Chr17:1475613 Cma08g01179 Cma-Chr8:7255077 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g413 . . . . . . . . Cmo08g01150 Cmo17g00267 . . . . . . . . . . . . . . Cla06g00535 Cam06g0577 Cec06g0574 Cco06g0582 Clacu06g0564 Cmu06g0558 Cre06g1326 Cone14ag0810 . Cone7ag0206 . . . Chy11g01440 . . . . . . . . . . . . Cma08g01179 Cma17g00280 Car08g01055 Car17g00255 Cpe12g00233 Cpe17g00117 Bhi12g01785 . . Lac12g2354 . . Lcy13g0224 . . . . . . . Lsi09g01367 . . Cme11g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001541 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 4 3 2 2 4 2 2 2 3 2 4 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00280 Cma_Chr17 FPKM 15.461957 17.322544 19.427464 18.350094 10.570905 10.360787 10.821296 24.661461 22.325903 25.41946