Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00284 ATGCCAACAAATTCCGGTCTGAAATATCAGCGACGAGAGATTGAAAGTTCATCGTACTCGATGCGTGGCCATGATTGGATCAATACGGTCCTTCCTGACGAACTAATCGTTGAGATTTTCCGGTGCCTTGACTCGAAGCTGAGTCGAGATGCTTGTTCTCTCGTCTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGAACCACTCTGCGAATTGGCGCAACGGGTAGCCCCGACCTTTTTGTTCAGCTCCTAGCTCGCCGTTTCGTCAATGTAAAAAATGTCCACATTGACGAGCGCTTGGCGATATCTCTCCCCCTTCATTCAGGAAGAAGACGGCGCAATGACGGCATGCGCTTGCCATTTAAATCACATCATGCAACTCTTAATACTGGGACTGAAGGTGCGCCGGAGTCTTCTTGTCTGTCTGATGCTGGGCTAATTGCCCTCTCCGTAGGTTTTCCGAACCTTGAGAAACTGAGCTTAATTTGGTGCTCGAACATTTCAAGTCAGGGCTTGACATCCCTTGCTGAGAAGTGCAAATTTTTGAAGTCTCTGGATCTACAGGGTTGCTATGTTGGGGATAGAGGTGTAGCTGCAGTTGGGGTATTCTGTAAACTACTCAAAGATGTAAATTTTCGTTTTTGTGAAGGGCTGACTGACGTTGGTTTGGTTGAATTATCCCGTGGCTGTGGGAAATCATTAAAATCATTTGGTATGGCTGCTTGTGCCAAGATAACGGATGTCTCACTAGAAGCTGTGGGCATGCACTGTAAATATCTGGAGTCCATATCGCTAGATTCAGAAGTTATCCATGACAAAGGGGTGCTTTCTCTTGCCCAAGGATGCACACTTCTTAAAGTTTTGAAGCTACAGTGTACAAATGTCACAGACGAAGCTTTGGTAGCTGTAGGCTCCTTATGTCCTTTTCTGGAACTATTGGCTTTATACAGTTTTCAGGAATTTACAGACAAGGGACTACGTGCAATTGGAGTAGGCTGCAAGAAGTTAAAGAATCTCACTCTAAATGATTGTTATTACCTGAGTGATATGGGCTTGGAAGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAATGGCTGCCACAACATTGGAACCATGGGACTTGAGTCCATCGGAAAATCTTGCCCCCAGCTCACTGAATTGGCTTTGCTGTATTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAATTGCAAGTTCTTACAAGCTCTCCATTTGGTAGATTGCTCGAAAATTGGAGATCAGGCAATATGCGGTATAGCCAAAGGATGCAGAAATTTGAAGAAACTCCATATTCGACGATGCTATGAGATTGGGAATGCCGGAATTATAGCTGTTGGAGAGAATTGCAATCTCCTCACGGATTTGAGCCTCAGATTTTGTGATAGGGTTGGCGATGAGGCGCTTATTGCCATCGGCAAGGGATGTTCCCTTCATCAACTGAATGTTAGTGGGTGCCACCGCATTGGTGACGTCGGAATCGCAGCCATTGCTAGAGGTTGTCCCCAATTGAGTTTCTTGGATGTAAGCGTTCTTGAGAACTTGGGAGATATGGCAATGGCTGAGTTAGGAGAAGGCTGCCCCTTGCTTGAGGACGTGGTACTGTCTCACTGTCACCATATAACCAATGCAGGAATAATGCATTTAGTGAAGGGGTGCTCGATGCTTGAATCGTGTCACATGGTCTATTGTCCCAGCATTACCGCAGCTGGGGTTGCCACTGTCGTTTCTAGCTGCCCCAACATAAAGAAAATTCTGGTCGAGAAATGGAAGCTGCCATTAGTTGTTGTTTTGTGCTGTAGCTTTCATGTAATATTTAAATGCAAAAGAAGACAACATGGGAGCAATGCACCCGTCGCGGAGAAGAGGCCAGTGCCTGATGGTTGTGGCATCAGAGCCATTTGGATCTTCAGCAATTTCGACGCTTTTATTTTCTCCAGGAGGTTTCCAGTGGTGGAGAGGCGGTGGCGAACAGCATGCAAGACCGAGAATGATAGACGTATTTCAGACGACCTCACGTCTAGCGTGTCTCCAGTACTTCCGAATGATTCGGAGTTAGCTGCTGCGTTTGTTGAGAGAAAGAAGAGGCAATGTGTGCTTTTTGGCCTCCTGTTAAAGGATTTTACCAATTATCCATGGTCTCTGAGGATAAAGAAGAAGGGTTGTATCTTTCGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAGCATTTAGTTTTTCACCCTGGAAAATCCAAAGCTTGCATTCTTCAAGTTCTGCCTCTTCTAGTGTAGAGGAGGCAGATAATGATGTCGAGGCTGAAAGCGCAAGCAATGTGGTCCGTATTGAGGAATTTTTAATGGAGAAAATGAGTAAGAATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCATACAATTATGCGAAGGTATCCTTCAAGATTTTAGGGGCATCATTATCAGGAATATCTGTCGATCCTAAATCTGTCAGCATTTATCCTGCTGTTAAATCTCCAATTGAGATTTTAGTTTGTGGAACACCTTGGATAAGTGTCCGTCTGTTGCCTCGGAACAAATATAACTGA 2619 45.25 MPTNSGLKYQRREIESSSYSMRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVKNVHIDERLAISLPLHSGRRRRNDGMRLPFKSHHATLNTGTEGAPESSCLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCKFLKSLDLQGCYVGDRGVAAVGVFCKLLKDVNFRFCEGLTDVGLVELSRGCGKSLKSFGMAACAKITDVSLEAVGMHCKYLESISLDSEVIHDKGVLSLAQGCTLLKVLKLQCTNVTDEALVAVGSLCPFLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLNDCYYLSDMGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIGKSCPQLTELALLYCQKIVNSGLLGIGQNCKFLQALHLVDCSKIGDQAICGIAKGCRNLKKLHIRRCYEIGNAGIIAVGENCNLLTDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDVGIAAIARGCPQLSFLDVSVLENLGDMAMAELGEGCPLLEDVVLSHCHHITNAGIMHLVKGCSMLESCHMVYCPSITAAGVATVVSSCPNIKKILVEKWKLPLVVVLCCSFHVIFKCKRRQHGSNAPVAEKRPVPDGCGIRAIWIFSNFDAFIFSRRFPVVERRWRTACKTENDRRISDDLTSSVSPVLPNDSELAAAFVERKKRQCVLFGLLLKDFTNYPWSLRIKKKGCIFRWNSFNWNSFYYRAFSFSPWKIQSLHSSSSASSSVEEADNDVEAESASNVVRIEEFLMEKMSKNLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVSIYPAVKSPIEILVCGTPWISVRLLPRNKYN 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1497171 1510500 + CmaCh17G002840.1 Cma17g00284 312179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00284 872 Gene3D Ribonuclease Inhibitor 183 372 IPR032675 -
Cma17g00284 872 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 501 606 - -
Cma17g00284 872 PANTHER UNCHARACTERIZED 501 606 - -
Cma17g00284 872 PANTHER UNCHARACTERIZED 32 516 - -
Cma17g00284 872 Pfam F-box 31 68 IPR041567 -
Cma17g00284 872 SMART LRR_CC_2 180 204 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 154 179 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 490 514 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 464 489 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 205 230 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 258 282 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 386 411 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 360 385 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 232 257 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 515 540 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 334 359 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 438 463 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 412 437 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 541 566 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 308 333 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 567 592 IPR006553 -
Cma17g00284 872 SMART LRR_CC_2 283 307 IPR006553 -
Cma17g00284 872 Gene3D Ribonuclease Inhibitor 373 617 IPR032675 -
Cma17g00284 872 SUPERFAMILY F-box domain 25 62 IPR036047 GO:0005515
Cma17g00284 872 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 32 516 - -
Cma17g00284 872 SUPERFAMILY RNI-like 141 377 - -
Cma17g00284 872 SUPERFAMILY RNI-like 358 605 - -
Cma17g00284 872 Pfam Leucine Rich repeat 179 200 IPR001611 GO:0005515
Cma17g00284 872 Pfam Leucine Rich repeat 438 460 IPR001611 GO:0005515
Cma17g00284 872 Pfam Leucine Rich repeat 490 512 IPR001611 GO:0005515
Cma17g00284 872 Pfam Leucine Rich repeat 464 486 IPR001611 GO:0005515
Cma17g00284 872 Gene3D - 27 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00284 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1057.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01184 Cma17g00284 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00347 Cma-Chr4:1690732 Cma17g00284 Cma-Chr17:1497171 1.53E-08 dispersed
Cma04g01264 Cma-Chr4:6468901 Cma17g00284 Cma-Chr17:1497171 2.12E-10 dispersed
Cma04g02413 Cma-Chr4:16654782 Cma17g00284 Cma-Chr17:1497171 6.29E-09 dispersed
Cma09g00460 Cma-Chr9:2023376 Cma17g00284 Cma-Chr17:1497171 1.51E-43 dispersed
Cma10g00761 Cma-Chr10:3490111 Cma17g00284 Cma-Chr17:1497171 8.20E-13 dispersed
Cma12g00338 Cma-Chr12:1717390 Cma17g00284 Cma-Chr17:1497171 4.81E-09 dispersed
Cma12g01204 Cma-Chr12:9437581 Cma17g00284 Cma-Chr17:1497171 8.85E-24 dispersed
Cma17g00284 Cma-Chr17:1497171 Cma20g00317 Cma-Chr20:1567644 4.94E-09 dispersed
Cma08g01184 Cma-Chr8:7283551 Cma17g00284 Cma-Chr17:1497171 6.31E-35 transposed
Cma11g01453 Cma-Chr11:9585689 Cma17g00284 Cma-Chr17:1497171 7.89E-06 transposed
Cma17g00885 Cma-Chr17:6743010 Cma17g00284 Cma-Chr17:1497171 2.04E-13 transposed
Cma17g00284 Cma-Chr17:1497171 Cma08g01183 Cma-Chr8:7277504 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g404 . . Bda03g01246 . . . . . Cmo08g01155 Cmo17g00272 . . . . . . . . . . . . . . Cla06g00530 Cam06g0571 . Cco06g0577 Clacu06g0559 Cmu06g0553 Cre06g1321 . . Cone7ag0198 Cone4ag0192 . . Chy11g01445 . . . . . . . . . . . . Cma08g01184 Cma17g00284 Car08g01061 Car17g00260 . Cpe17g00112 Bhi12g01779 . . . . . . . . . . . . . Lsi09g01373 . . Cme11g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00284 Cma_Chr17 FPKM 1.088235 1.703419 2.861207 2.422834 3.236207 2.669546 3.268791 3.88249 3.98516 4.119726