Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00286 | ATGGGTTGTATACACACAAAATGTTGCTGTCGCTACCCAAAATCATTGGTTGGAGAATCCCAAGACTTTCATGAAGAAGATAAGAACACAGTGATCGAAAGATCATTGGAGTTCATTCCTGTTGCTTCCCACAACTATCATTTGGAATACTTGGTGCTGTCTCGGCGTGGGTTCTACCCTGAATCCCCTGATAAAGAAAATCAAGACAGTTTCTGCATTAGAACAAGTATTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAAGCTAATAGAAAAGCTTTGTAATGATCCCAAATTGTTGGATAATCCTATACAAGCTTATAATTCAGCATTTTTGTGTACAAATGATGAGCTGCATACAAGTGAAATTGATGATTCAATGAGTGGAACAACTGCTATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCCAATGTGGGCGATTCAAGAGCTGTAATTGCAGTTAAGGAAGGGAACCGTGTCCTTGCCAAGGACTTGTCAAACGATCAAACACCATTTAGAAAGGATGAGTATGAGAGAGTGAGGCTGTGTGGGGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGGCTTATAGATCCTGATATTCAGTGCTGGGGCGACGAAGAGAGCCAGGGCGGCGACCCGCCTCGACTCTGGGTTCAAAATGGTTTGTATCCTGGGACTGCATTTACCAGGAGCATAGGAGATAGTACTGCAGAGAAGATTGGTGTAATTGCTGTTCCTGAGGTTTTAGTTCTTCAGCTTAAGGCTAATCATCTGTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCGAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAGGATGCGTGCACTGCCATTGCGGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGAACCGATGATATCACGATCATTATTGTTCATATAGAAGGCTTGTCTAATATTGCTTCTTTGAGAATCGATTTCTCAAATCTACCTACCGAACCAAACTCTCAAGATGTCGTTGCAACAAATCAGAACCCGACAATTGTGGTTCTAACTCTAGCTAATGAGAGACCTTTATAA | 1155 | 41.56 | MGCIHTKCCCRYPKSLVGESQDFHEEDKNTVIERSLEFIPVASHNYHLEYLVLSRRGFYPESPDKENQDSFCIRTSIQGNPNAHFFGVFDGHGQFGMQCSNFVKDKLIEKLCNDPKLLDNPIQAYNSAFLCTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNRVLAKDLSNDQTPFRKDEYERVRLCGARVLSVDQVEGLIDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVIAVPEVLVLQLKANHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIEGLSNIASLRIDFSNLPTEPNSQDVVATNQNPTIVVLTLANERPL | 384 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 1524974 | 1527140 | + | CmaCh17G002860.1 | Cma17g00286 | 312181 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00286 | 384 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 33 | 370 | - | - | |
Cma17g00286 | 384 | ProSitePatterns | PPM-type phosphatase domain signature. | 85 | 93 | IPR000222 | GO:0043169 | |
Cma17g00286 | 384 | SUPERFAMILY | PP2C-like | 41 | 341 | IPR036457 | - | |
Cma17g00286 | 384 | SMART | PP2C_4 | 52 | 337 | IPR001932 | - | |
Cma17g00286 | 384 | Gene3D | - | 42 | 340 | IPR036457 | - | |
Cma17g00286 | 384 | Pfam | Protein phosphatase 2C | 78 | 318 | IPR001932 | - | |
Cma17g00286 | 384 | CDD | PP2Cc | 65 | 339 | IPR001932 | - | |
Cma17g00286 | 384 | PANTHER | PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN | 33 | 370 | - | - | |
Cma17g00286 | 384 | ProSiteProfiles | PPM-type phosphatase domain profile. | 49 | 339 | IPR001932 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma14g01665 | Cma17g00286 | CCT | |
Cma08g01186 | Cma17g00286 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00090 | Cma-Chr1:416403 | Cma17g00286 | Cma-Chr17:1524974 | 0 | dispersed | |
Cma10g00654 | Cma-Chr10:2961143 | Cma17g00286 | Cma-Chr17:1524974 | 1.99E-141 | dispersed | |
Cma17g00286 | Cma-Chr17:1524974 | Cma01g01746 | Cma-Chr1:11798990 | 2.29E-31 | dispersed | |
Cma14g01665 | Cma-Chr14:12453529 | Cma17g00286 | Cma-Chr17:1524974 | 0 | wgd | |
Cma17g00286 | Cma-Chr17:1524974 | Cma08g01186 | Cma-Chr8:7303681 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00286 | - | - | csv:101217134 | 698.738 |