Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00286 ATGGGTTGTATACACACAAAATGTTGCTGTCGCTACCCAAAATCATTGGTTGGAGAATCCCAAGACTTTCATGAAGAAGATAAGAACACAGTGATCGAAAGATCATTGGAGTTCATTCCTGTTGCTTCCCACAACTATCATTTGGAATACTTGGTGCTGTCTCGGCGTGGGTTCTACCCTGAATCCCCTGATAAAGAAAATCAAGACAGTTTCTGCATTAGAACAAGTATTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAAGCTAATAGAAAAGCTTTGTAATGATCCCAAATTGTTGGATAATCCTATACAAGCTTATAATTCAGCATTTTTGTGTACAAATGATGAGCTGCATACAAGTGAAATTGATGATTCAATGAGTGGAACAACTGCTATTACAGTTCTTGTTGTTGGGGATACCCTTTATGTGGCCAATGTGGGCGATTCAAGAGCTGTAATTGCAGTTAAGGAAGGGAACCGTGTCCTTGCCAAGGACTTGTCAAACGATCAAACACCATTTAGAAAGGATGAGTATGAGAGAGTGAGGCTGTGTGGGGCTAGAGTTCTTAGTGTTGATCAAGTGGAAGGGCTTATAGATCCTGATATTCAGTGCTGGGGCGACGAAGAGAGCCAGGGCGGCGACCCGCCTCGACTCTGGGTTCAAAATGGTTTGTATCCTGGGACTGCATTTACCAGGAGCATAGGAGATAGTACTGCAGAGAAGATTGGTGTAATTGCTGTTCCTGAGGTTTTAGTTCTTCAGCTTAAGGCTAATCATCTGTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCGAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAGGATGCGTGCACTGCCATTGCGGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGAACCGATGATATCACGATCATTATTGTTCATATAGAAGGCTTGTCTAATATTGCTTCTTTGAGAATCGATTTCTCAAATCTACCTACCGAACCAAACTCTCAAGATGTCGTTGCAACAAATCAGAACCCGACAATTGTGGTTCTAACTCTAGCTAATGAGAGACCTTTATAA 1155 41.56 MGCIHTKCCCRYPKSLVGESQDFHEEDKNTVIERSLEFIPVASHNYHLEYLVLSRRGFYPESPDKENQDSFCIRTSIQGNPNAHFFGVFDGHGQFGMQCSNFVKDKLIEKLCNDPKLLDNPIQAYNSAFLCTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNRVLAKDLSNDQTPFRKDEYERVRLCGARVLSVDQVEGLIDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVIAVPEVLVLQLKANHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIEGLSNIASLRIDFSNLPTEPNSQDVVATNQNPTIVVLTLANERPL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1524974 1527140 + CmaCh17G002860.1 Cma17g00286 312181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00286 384 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 33 370 - -
Cma17g00286 384 ProSitePatterns PPM-type phosphatase domain signature. 85 93 IPR000222 GO:0043169
Cma17g00286 384 SUPERFAMILY PP2C-like 41 341 IPR036457 -
Cma17g00286 384 SMART PP2C_4 52 337 IPR001932 -
Cma17g00286 384 Gene3D - 42 340 IPR036457 -
Cma17g00286 384 Pfam Protein phosphatase 2C 78 318 IPR001932 -
Cma17g00286 384 CDD PP2Cc 65 339 IPR001932 -
Cma17g00286 384 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 33 370 - -
Cma17g00286 384 ProSiteProfiles PPM-type phosphatase domain profile. 49 339 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01665 Cma17g00286 CCT
Cma08g01186 Cma17g00286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00090 Cma-Chr1:416403 Cma17g00286 Cma-Chr17:1524974 0 dispersed
Cma10g00654 Cma-Chr10:2961143 Cma17g00286 Cma-Chr17:1524974 1.99E-141 dispersed
Cma17g00286 Cma-Chr17:1524974 Cma01g01746 Cma-Chr1:11798990 2.29E-31 dispersed
Cma14g01665 Cma-Chr14:12453529 Cma17g00286 Cma-Chr17:1524974 0 wgd
Cma17g00286 Cma-Chr17:1524974 Cma08g01186 Cma-Chr8:7303681 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00286 - - csv:101217134 698.738