Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00289 ATGGAAGAGAGAGAAGCGAGGGAGGAGGAATCCGGTGTTGCCAATTTTGGACTTCCCGAGGAAATACTGGAAGTTTTACCGTCGGATCCATTCGAGCTGCTCGATGTGGCTCGGAGAATCACCTCCATTGCTCTCTCGACGCGTGTTTCTGTTCTCGAATCCGAATCCTCCTCTCTCCATGCTCAGCTTTCCGAGAAGGATGCCCTTATCGTAGAGCTACAATCGCAGATCGAATCCCTCGATGCCTCTTTATTGGAGAAATCTGAAATTCTCGCCCGCGCCGATCCGGAAAAGGAGGCGTTGTTGCAAGAGAACGCGTCGCTTTCGAACACTGTGAAGAAGCTCACTCGAGATGTCTCGAAGTTGGAGGTCTTCAGAAAGACGCTTATGCAGTCCCTACACGAGGAAGAGAACAATACTGGAGGTTCAGAGGTTGCTGTCAAAATAGAGAGTCAGCAAAGTTTGCCCTCTACTCCGCTCGTTGGAGAAGATGATCCGACATTGCCACCATCTAAGTACTCATCAATCCAGAGCAACACTTCTGAAACAGTGAATTCAGTAAAAGAAGAGCATGAGGGAGATGTGACCACTTCAAGGCCTCGTATATCAAACAGACTTCTGTTAGCATCACAGACTAGCACACCTCGGCTATCACCTCCCGGTTCTCCTCCCATTACTTCTGCATCTGTGTCTCCTACGAGAAGGTCTAATCCTGTTTCCCCAAAGCGTCATGCAATGTCATTCTCTGTCTCAAGGGGTGTGTTCGATAGGACCTCTATGTATTCACCCGTCGGCAATCACAGCTCAAGCCCTCAAGCAGGAACTCATACTGGACGAACTCGAGTTGATGGGAAAGAATTCTTCCGCCAAGTGAGGAGCCGGTTGTCGTATGAGCAGTTCAGTTCATTCTTAACCAGTGTCAAAGAGTTGAATGCCCATAAGCAAACGAAAGAGGAGACCCTTCGAAAGGCTGATGAGATATTTGGGCCGGATAACAAGGACCTGTTCACTATATTTGAAGGTTTGATTACACGTAATCTTCACTGA 1047 48.23 MEEREAREEESGVANFGLPEEILEVLPSDPFELLDVARRITSIALSTRVSVLESESSSLHAQLSEKDALIVELQSQIESLDASLLEKSEILARADPEKEALLQENASLSNTVKKLTRDVSKLEVFRKTLMQSLHEEENNTGGSEVAVKIESQQSLPSTPLVGEDDPTLPPSKYSSIQSNTSETVNSVKEEHEGDVTTSRPRISNRLLLASQTSTPRLSPPGSPPITSASVSPTRRSNPVSPKRHAMSFSVSRGVFDRTSMYSPVGNHSSSPQAGTHTGRTRVDGKEFFRQVRSRLSYEQFSSFLTSVKELNAHKQTKEETLRKADEIFGPDNKDLFTIFEGLITRNLH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1539268 1544863 + CmaCh17G002890.1 Cma17g00289 312184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00289 348 PANTHER - 8 348 - -
Cma17g00289 348 MobiDBLite consensus disorder prediction 227 244 - -
Cma17g00289 348 MobiDBLite consensus disorder prediction 252 277 - -
Cma17g00289 348 Coils Coil 98 118 - -
Cma17g00289 348 MobiDBLite consensus disorder prediction 199 216 - -
Cma17g00289 348 Coils Coil 307 327 - -
Cma17g00289 348 MobiDBLite consensus disorder prediction 170 184 - -
Cma17g00289 348 MobiDBLite consensus disorder prediction 154 280 - -
Cma17g00289 348 PANTHER BNAC01G41860D PROTEIN 8 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00289 - - - cmax:111499057 654.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01189 Cma17g00289 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00289 Cma-Chr17:1539268 Cma20g00273 Cma-Chr20:1326568 1.54E-66 dispersed
Cma17g00289 Cma-Chr17:1539268 Cma06g01451 Cma-Chr6:9282589 3.82E-98 wgd
Cma17g00289 Cma-Chr17:1539268 Cma08g01189 Cma-Chr8:7312596 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g391 . . . . . . . . Cmo08g01161 Cmo17g00278 . . Car06g01252 . . Cpe08g00225 . . . . . . . . Cla06g00525 Cam06g0564 Cec06g0564 Cco06g0571 Clacu06g0552 Cmu06g0548 Cre06g1317 Cone14ag0802 Cone15ag0802 . . Lsi05g01484 . Chy11g01450 Cme06g00674 . . . . Bpe05g00758 . . . . Cmo06g01451 . Cma08g01189 Cma17g00289 Car08g01065 Car17g00265 Cpe12g00241 Cpe17g00109 Bhi12g01766 . . . . . . . . . . . . . Lsi09g01379 Csa03g01399 Chy06g00642 Cme11g01955
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002295 1 3 1 0 1 2 3 2 2 2 1 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 7 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00289 Cma_Chr17 FPKM 7.17837 7.667376 14.734566 14.32471 25.452871 28.912886 22.762337 10.432715 11.058111 9.541345