Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00290 ATGGAAAATGATCGAGAATCTCCAGCTTCTTCTTTCAGTAAGACGCCTGAGCGAACGTTGCAGCGATTGAAGATGTTGTTGCAAGTTTCAACCGCAAAGAAATTGGATCAGCAAAACTCTGCGAATATGGTTGGATGCAATCCGACTGTGCTTCAAACCGGAAGCAATGATTCAGGCGATATTGCTTGTCAAGATCAATCAAAAGATCAGACAGATCAAGCTGTGGGGACTCCCAATTTAGGGAGAAGAAGACCGCGTGGATTCTCCGACTCTTTTGCTTCTCATGAGTTGAGATTATTAGAATTGGAAGATGAAGCTAAAGACGAGTCATCTCCTAGAGGGGTGCTCGAGGACTGCTTGAGAAGCTTAGATTCTGAAACAACTACTTCCCGGGACAGCACTTCCGATTGGGTAGTTAATCCGGACTCCAGAAATCCAAGTCATTGGAAAGGTTTCTTTCGCTTACTGAAGAAAGGACCTCAAATGCGATTTCAGACCTTTCCTCCTCTAGCTGTTCCAAAAATCGCCAAAAGAAAGAGCAAAAGAATTAGAGAGGATATGCTTCCGGCAGTATCACCAGTGAGGGACTCTTCTATACAGTCCGAGTTTTGCTACTTCAAATCTTCTTGGAAGAATTTCACACTTTCAGAGCTTGAAGCTGCTAGCAATAACTTCAACCCAGAAAACTTGATTGGTGAGGGTGGTTATTCTGAAGTTTACAAAGGGCAGCTGGAAGATGGGCAACTTGTCGCGATCAAGCGGCTTAACAGAGGCACCCAAGAAGAGATGACTGCAGATTTCTTGTCTGAGCTTGGAATTATCGTTCATGTTGATCATCCTAATGTTGCGAGCGTAATTGGGTACGGCGTTGAAGGGGGAATGCACCTTATACTTCATTTATCACCCCTTGGAAGCCTGGCATCCATACTTTATGGGCCAAAGGAGAGACTGGATTGGTCAACCAGGTTTAAGATTGCTCTAGGAACTGCTGAAGGCCTCCTGTATCTTCATGAAGGCTGCCAAAGAAGAATAATCCACAGAGACATTAAGGCCTCTAATATTTTACTTAGAGAAGATTTTGAGCCTCAGATATCCGACTTTGGGCTTGCTAAGTGGCTACCAGATCAATGGACTCACCATACCGTGTCGAAGTTCGAAGGCACATTCGGGTACCTTCCTCCTGAGTTCTTTATGCATGGCATTGTTGATGAAAAAACCGATGTCTATGCTTATGGAGTACTTTTATTGGAACTCATTACCGGACGGCAAGCATTGAATAGCTCACAGCAAAGCCTTGTGATGTGGGCTAAACCTCTACTTCTTAAAGATAATCTCAAGGATCTTGTTGATCCATGTCTTTTCGACGTATTTGACACCGAACAAATGAAGCTTATGACCTCAGTAGCTTCAATGTGCATAAATCAATCTTCAATTCAACGGCCAGAGATGTGTGAGATTGTTGAGATCCTGAAAGGGAATGGAGTTGCTTTGGAACTTTTACAACAACAGAAGTCTAGATTTCAGAGGACATACTCTGAGGAACTTTTAGATGCAGAAGAGTATAATTCTACCAAGTATTTAAGTGATATGGATCGACATCTAGAGATTGTTTTAGGAGCCTGTGATATTGATGTTTAG 1638 42.92 MENDRESPASSFSKTPERTLQRLKMLLQVSTAKKLDQQNSANMVGCNPTVLQTGSNDSGDIACQDQSKDQTDQAVGTPNLGRRRPRGFSDSFASHELRLLELEDEAKDESSPRGVLEDCLRSLDSETTTSRDSTSDWVVNPDSRNPSHWKGFFRLLKKGPQMRFQTFPPLAVPKIAKRKSKRIREDMLPAVSPVRDSSIQSEFCYFKSSWKNFTLSELEAASNNFNPENLIGEGGYSEVYKGQLEDGQLVAIKRLNRGTQEEMTADFLSELGIIVHVDHPNVASVIGYGVEGGMHLILHLSPLGSLASILYGPKERLDWSTRFKIALGTAEGLLYLHEGCQRRIIHRDIKASNILLREDFEPQISDFGLAKWLPDQWTHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALNSSQQSLVMWAKPLLLKDNLKDLVDPCLFDVFDTEQMKLMTSVASMCINQSSIQRPEMCEIVEILKGNGVALELLQQQKSRFQRTYSEELLDAEEYNSTKYLSDMDRHLEIVLGACDIDV 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1551954 1556596 + CmaCh17G002900.1 Cma17g00290 312185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00290 545 MobiDBLite consensus disorder prediction 57 89 - -
Cma17g00290 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Cma17g00290 545 Gene3D Transferase(Phosphotransferase) domain 1 302 513 - -
Cma17g00290 545 ProSiteProfiles Protein kinase domain profile. 225 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00290 545 Gene3D Phosphorylase Kinase; domain 1 190 299 - -
Cma17g00290 545 MobiDBLite consensus disorder prediction 57 77 - -
Cma17g00290 545 SUPERFAMILY Protein kinase-like (PK-like) 205 490 IPR011009 -
Cma17g00290 545 PANTHER OS08G0249100 PROTEIN 106 519 - -
Cma17g00290 545 PANTHER PROTEIN KINASE FAMILY PROTEIN 106 519 - -
Cma17g00290 545 Pfam Protein tyrosine and serine/threonine kinase 229 490 IPR001245 GO:0004672|GO:0006468
Cma17g00290 545 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Cma17g00290 545 SMART serkin_6 225 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00290 - - - csv:101216575 889.797
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01190 Cma17g00290 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01092 Cma-Chr12:8610103 Cma17g00290 Cma-Chr17:1551954 2.06E-168 dispersed
Cma16g00742 Cma-Chr16:3970583 Cma17g00290 Cma-Chr17:1551954 5.09E-140 dispersed
Cma19g00004 Cma-Chr19:31763 Cma17g00290 Cma-Chr17:1551954 5.22E-126 transposed
Cma02g01817 Cma-Chr2:10081482 Cma17g00290 Cma-Chr17:1551954 6.99E-156 transposed
Cma17g00290 Cma-Chr17:1551954 Cma08g01190 Cma-Chr8:7318469 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69225 PF07714 PK_Tyr_Ser-Thr 1.70E-39 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00290 Cma_Chr17 FPKM 0.699764 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0