Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00294 ATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTTATGGTGGTGATCCTCCTCCTCGTCGTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCAACTGTACATGATATTCGCCAGAACAAACAGACCGTCAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAATCGGACTCTGGCGTCCGTGAAGGAAATGATGGAAAGAATTCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGA 288 50.69 MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQVL 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1567896 1569077 - CmaCh17G002940.1 Cma17g00294 312189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00294 95 MobiDBLite consensus disorder prediction 67 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00294 - - - csv:101217077 169.088
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01192 Cma17g00294 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00294 Cma-Chr17:1567896 Cma08g01192 Cma-Chr8:7330478 7.81E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g386 . . Bda03g01239 . . . . . Cmo08g01166 Cmo17g00281 . . . . . . . . . . . . . . Cla06g00521 Cam06g0560 Cec06g0560 Cco06g0567 Clacu06g0548 Cmu06g0544 Cre06g1313 . . . . . . Chy11g01454 . . . . . . . . . . . . Cma08g01192 Cma17g00294 Car08g01070 . Cpe12g00245 Cpe17g00105 Bhi12g01758 . . . . . . . . . . . . . Lsi09g01382 . . Cme11g01959
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008414 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00294 Cma_Chr17 FPKM 4.362306 4.404853 6.406864 6.957094 4.735917 5.261714 5.713651 8.904187 8.005083 7.443678