Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00295 ATGCCCTCTGATCAGAGTCAAATTACAACTTTGTCTTCCTGTCGTTCCCGTGAATTGATCGAATTAGAGATGGCGAGCGCAGTAGATGCTGCAGGAGATCCAATTCCTACATCGGCGGTGCTAATGTCCTCGTCAAAGCACATTGCGAACATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAGGAAGGATCCGAACCCGGAGAAATGCCTCGACAAAGGCCAACAAGTCACTCGCTGCGTCCTCTCTCTTATGGATTCGCCATTCTTGATCGGGTCTGCTCTGCTGGGTAATATTGAGAGTGGGCCAGAGATTGTTTTTTGGAGTGATGGTGATTACAAGGCCGGTAGCCATTTGGTTAGGTGGAAGATCACCTCTCTCCCCCTTTGCAACGGTGGTTTGGGGATAGGGTGCACGAAAGATATGGATGCTTATGTCGGTTGCATGTACTACAATACGAATGAGTTCGATTTATGTCGCAAAGAGCAGGAAGCATTTGAGAAAGCATCTCGACTTGTTTCGCTCTGTCGAGAGGCTGCCATGGCCATTGGGGAGCACAAGGATGTCGAAAATGGTGAAATCAATGGCCTAAAGGCCTTGGAAAAGCCTCTTCTTATCAATTCTTCTGAATGTGAAGGTGCTCAAAGAGCCATGAAAAGAGAGCCCTCCTTATGGATGGTCTTGCTTTGCACATTGGTTGCTGTTTATGGTTCCTTTGAATTCGGATCGTGTGTGGGCTATTCAGCACCAACTCAATCTGTGATCAGGGAAGAACTTCATCTCTCTCTTCCTCAGTATTCCATGTTTGGATCAATATTAACAATTGGAGCAATGGTCGGTGCTGGAGCTTTATCCCTATACTTCGGAAGAGTGCTGACTGGTTATGGGATTGGAGTTTTCTCTTATGTGGTTCCTGTATTCATAGCAGAAATAGCCCCAAAGAATCTACGTGGAGGCCTCACAACACTCAATCAGGCAAAGGTCGGTAACGAGAAAGGCTTCCAAGCTGCATTGCAGCGACTTCGTGGAAAAGACGTCGATATCTCCGACGAGGCAGCTGAAATCAAAGATTACAATGAAACACTTCAAAGACTTCCAAAAGCCAGACTCCTAGAACTGTTCCAAAGCAAATATATTCGTCCTGTTATTATCGGTGTGGGGCTAATGATATTCCAACAATTTGGAGGCATCAATGGAATTGGTTTCTATGCAAGTGAAACCTTTGCATTAGCTGGCCCCTCAGCAAGCAAAAGTGGTACCATTTCTTATGCTTGCCTTCAGGTTCCGATAACGGTGATCGGAGCGATTCTTATGGATAAGTCGGGGCGTAAGCCGCTTATAATGATCTTCCCAATTCATGTGAAAGGAGCTGCTGGGAGCTTGGTGGTTTTGGTGAATTGGTTAGGTGCTTGGGCTGTTTCCTATACCTTCAACTTCCTCATGAGTTGGAGTCCTTCAGGGACATTTTATGTTTATTCAGTGTTCTCTTTGTTGACTGTTGTGTTTGTGGCCAAGTTAGTGCCAGAAACCAAAGGCAAGACATTAGAAGAAATCCAAGCCTGCATCAACCCAGCAAGAACAGGACTTGAAATTTTGAATTGA 1608 45.65 MPSDQSQITTLSSCRSRELIELEMASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCVLSLMDSPFLIGSALLGNIESGPEIVFWSDGDYKAGSHLVRWKITSLPLCNGGLGIGCTKDMDAYVGCMYYNTNEFDLCRKEQEAFEKASRLVSLCREAAMAIGEHKDVENGEINGLKALEKPLLINSSECEGAQRAMKREPSLWMVLLCTLVAVYGSFEFGSCVGYSAPTQSVIREELHLSLPQYSMFGSILTIGAMVGAGALSLYFGRVLTGYGIGVFSYVVPVFIAEIAPKNLRGGLTTLNQAKVGNEKGFQAALQRLRGKDVDISDEAAEIKDYNETLQRLPKARLLELFQSKYIRPVIIGVGLMIFQQFGGINGIGFYASETFALAGPSASKSGTISYACLQVPITVIGAILMDKSGRKPLIMIFPIHVKGAAGSLVVLVNWLGAWAVSYTFNFLMSWSPSGTFYVYSVFSLLTVVFVAKLVPETKGKTLEEIQACINPARTGLEILN 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1569873 1583955 - CmaCh17G002950.1 Cma17g00295 312190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00295 535 Gene3D MFS general substrate transporter like domains 452 530 IPR036259 -
Cma17g00295 535 SUPERFAMILY MFS general substrate transporter 233 521 IPR036259 -
Cma17g00295 535 Pfam CHCH domain 140 170 IPR010625 -
Cma17g00295 535 Gene3D MFS general substrate transporter like domains 223 329 IPR036259 -
Cma17g00295 535 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 284 327 - -
Cma17g00295 535 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 328 451 - -
Cma17g00295 535 PANTHER - 284 327 - -
Cma17g00295 535 PANTHER - 328 451 - -
Cma17g00295 535 PANTHER - 210 283 - -
Cma17g00295 535 PANTHER - 451 525 - -
Cma17g00295 535 Gene3D MFS general substrate transporter like domains 330 451 IPR036259 -
Cma17g00295 535 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 451 525 - -
Cma17g00295 535 Pfam Sugar (and other) transporter 331 451 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cma17g00295 535 Pfam Sugar (and other) transporter 268 328 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cma17g00295 535 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 210 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00295 K03444 ERD6, ESL1; MFS transporter, SP family, ERD6-like sugar transporter - csv:101214686 459.529
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01195 Cma17g00295 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00295 Cma-Chr17:1569873 Cma12g00470 Cma-Chr12:2445655 1.00E-59 dispersed
Cma08g01195 Cma-Chr8:7339389 Cma17g00295 Cma-Chr17:1569873 1.93E-57 transposed
Cma14g01652 Cma-Chr14:12380224 Cma17g00295 Cma-Chr17:1569873 1.09E-117 wgd
Cma17g00295 Cma-Chr17:1569873 Cma08g01194 Cma-Chr8:7336923 1.16E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g383 . . . . . Bpe14g01156 . . Cmo08g01168 Cmo17g00283 . . . . . . . . . . . . . . . . . . . . . Cone14ag0797 Cone15ag0799 . . . . . . Blo02g00572 Blo07g00192 Bda11g00545 . . Bpe13g00644 . Bma06g01522 . . . Cma08g01195 Cma17g00295 Car08g01071 Car17g00271 Cpe12g00247 Cpe17g00104 Bhi12g01754 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000288 3 7 2 3 2 5 5 5 5 5 4 5 4 4 5 5 5 5 4 5 4 5 4 5 5 4 3 4 6 19 147
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00295 Cma_Chr17 FPKM 30.086121 29.661524 17.893257 15.983421 22.081095 24.159792 21.016077 12.022266 12.472661 10.821026