Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00297 ATGGCTCTCTGTACGCTAACGTTTCCTGCTCATGTCGGCCGAGTTGCAGCGAAAGAACACGATGGTTCTCGGTTCTTGTCGGGGACGGATCTGGTCTTCCGCTTTCAGAAAAGAGTCAATCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAGAGACGGGGGAGTATCCTTCACAGAGGCCACCAACTCCTATTTTGGACACAATAAACTATCCAATTCATATGAAAAATCTATCCATCAAGGAGCTTTATCAACTAGCTGATGAAGTAAGATCTGATGTGATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCTAGCCTTGGCGTGGTGGAGCTCACGGTGGCTCTTCACTATGTCTTCAATGCCCCACAGGACAGGATTTTGTGGGACGTTGGTCATCAGTCTTATCCGCATAAAATTCTTACTGGAAGGAGGGATAAGATGTCGACTATTAGACAGACAAACGGGTTGTCGGGTTTCACGAAGCGGTCGGAGAGTGAATTCGATTGCTTTGGCGCAGGACACAGCTCTACCACCATCTCGGCAGGCTTAGGAATGGCTGTGGGAAGGGATCTCAAGGGAAGAAAGAACAATGTGGTTGCAGTTATAGGTGATGGTGCCATGACTGCAGGGCAAGCTTATGAAGCCATGAACAATGCAGGCTACCTCGACTCCGACATGATTGTTATTCTTAATGACAACAAACAAGTCTCTTTACCGACTGCAACTCTCGATGGGCCGGTACCGCCCGTCGGAGCTTTGAGCAGTGCTCTCAGCAGGCTGCAGTCAAACAGGCCTCTCAGAGAATTGAGAGAGGTAGCCAAGGGTGTCACGAAACAAATTGGTGGCCCAATGCATGAATTAGCAGCAAAAGTTGATGAATATGCTCGTGGAATGATTAGTGGTTCTGGCTCAACGTTATTTGAAGAGCTTGGGCTCTATTATATCGGCCCTGTTGATGGTCATAACATGGATGATCTTGTTTCCATTCTCAAGGAAGTTAAGAGTACTAAAACCACCGGTCCAGTCCTCATCCATGTTGTCACTGAGAAAGGACGAGGCTATCCATATGCAGAAAAGGCTGCTGATAAGTACCATGGAGTCACAAAGTTTGATCCAGCAACTGGGAAACAGCAGATATCGAAGGCTGCAACGCAGTCGTATACGACGTACTTCGCAGAAGCATTGATTGCAGAAGCTGAAAATGACAAAGATATTATTGCAATCCATGCTGCAATGGGAGGAGGCACAGGCTTAAATCTTTTCCAAAGACGCTTTCCCACAAGATGCTTTGATGTTGGTATTGCTGAACAGCATGCTGTTACATTTGCTGCTGGTCTGGCCTGTGAAGGCCTTAAACCGTTCTGTGCGATCTATTCATCGTTCATGCAACGGGCGTACGACCAGGTTGTTCATGATGTTGATTTGCAGAAGTTGCCTGTGAGATTTGCAATGGATAGAGCAGGCTTGGTTGGAGCCGATGGCCCGACTCATTGTGGTTCGTTTGATGTTACATTTATGGCATGCCTGCCTAACATGGTGGTGATGGCCCCGTCCGATGAGGCCGAGCTCTTTAACATGGTTGCTACAGCTGCAGCCATAGAGGACCGACCTAGTTGTTTGCGGTATCCACGAGGTAACGGTATTGGCATCGAGCTGCCACCAGGGAATAAAGGCATTCCTATTGAGGTTGGGAAAGGAAGGATTTTACAAGAAGGGGAAAGAGTCGCACTGTTGGGCTACGGAACAGCAGTACAAAACTGTTTGGCTGCTGCATCGATGCTCGAACGCCATGGCTTACGAATAACCGTAGCAGATGGACGTTTCTGCAAGCCACTCGACCGAGCCCTTATCCGAAATCTCGCTAAATCACACGAGATTTTGATCACAGTGGAAGAAGGATCCATAGGGGGATTTGGATCTCATGTCATCCAGTTCCTGGCACTTGATGGCCTTCTTGATGGCACCTTGAAGTGGAGACCGCTAGTCCTTCCCGACCGATACATCGACCACGGATCACCAGCCGACCAACTTGCTGAAGCAGGCCTTACTCCATCTCATATTGCTGCTACAGTATTCAATATGCTTGGACAAACCAGGGAAGCTCTTGAGATCATGTCATAG 2139 48.11 MALCTLTFPAHVGRVAAKEHDGSRFLSGTDLVFRFQKRVNQVKKRPGGICASLSETGEYPSQRPPTPILDTINYPIHMKNLSIKELYQLADEVRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEFDCFGAGHSSTTISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNMDDLVSILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQQISKAATQSYTTYFAEALIAEAENDKDIIAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFNMVATAAAIEDRPSCLRYPRGNGIGIELPPGNKGIPIEVGKGRILQEGERVALLGYGTAVQNCLAAASMLERHGLRITVADGRFCKPLDRALIRNLAKSHEILITVEEGSIGGFGSHVIQFLALDGLLDGTLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNMLGQTREALEIMS 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1588176 1593720 + CmaCh17G002970.1 Cma17g00297 312192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00297 712 CDD TPP_PYR_DXS_TK_like 397 550 - -
Cma17g00297 712 PANTHER BNAA01G35430D PROTEIN 23 708 - -
Cma17g00297 712 SMART Transket_pyr_3 391 556 IPR005475 -
Cma17g00297 712 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Cma17g00297 712 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Cma17g00297 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 66 453 IPR029061 -
Cma17g00297 712 CDD TPP_DXS 105 360 IPR005477 GO:0008661|GO:0016114
Cma17g00297 712 Gene3D - 62 363 - -
Cma17g00297 712 Gene3D - 570 702 IPR009014 GO:0003824
Cma17g00297 712 Pfam Transketolase, pyrimidine binding domain 392 552 IPR005475 -
Cma17g00297 712 ProSitePatterns Transketolase signature 1. 94 113 IPR005474 -
Cma17g00297 712 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 23 708 IPR005477 GO:0008661|GO:0016114
Cma17g00297 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 389 579 IPR029061 -
Cma17g00297 712 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 68 702 IPR005477 GO:0008661|GO:0016114
Cma17g00297 712 ProSitePatterns Transketolase signature 2. 497 513 IPR020826 -
Cma17g00297 712 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 71 701 IPR005477 GO:0008661|GO:0016114
Cma17g00297 712 Gene3D - 390 560 - -
Cma17g00297 712 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 69 354 IPR005477 GO:0008661|GO:0016114
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00297 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101214927 1376.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01196 Cma17g00297 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00014 Cma-Chr8:80985 Cma17g00297 Cma-Chr17:1588176 2.60E-10 dispersed
Cma16g00741 Cma-Chr16:3940748 Cma17g00297 Cma-Chr17:1588176 9.78E-08 dispersed
Cma17g00297 Cma-Chr17:1588176 Cma17g01415 Cma-Chr17:9354694 1.49E-10 dispersed
Cma11g00414 Cma-Chr11:2030192 Cma17g00297 Cma-Chr17:1588176 0 transposed
Cma12g00319 Cma-Chr12:1630172 Cma17g00297 Cma-Chr17:1588176 0 transposed
Cma04g00864 Cma-Chr4:4432800 Cma17g00297 Cma-Chr17:1588176 9.19E-42 transposed
Cma17g00297 Cma-Chr17:1588176 Cma08g01196 Cma-Chr8:7343171 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00297 Cma_Chr17 FPKM 20.656721 21.152317 116.048325 118.729515 57.218102 64.905861 56.986458 52.983959 51.435497 49.189346