Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00302 ATGGATTGCAACAAAGATGAAGCCATTAAAGCAAGGGAGATTGCTGAGAAGAAGATGGAAAGCAAAGATTTCACGGGGGCTCGTAAGCTTGTTCTCAAGGCTCAACAGCTAAATCCGGACGCAGAGAATATTTCGCAAATGCTCATGGTTTGTGATGTGCATTGTGCGGCAGAGAAGAAGCTTTTAGGGAATGAGATGGATTGGTATGCCATCCTTCAGATCGAGCAAACAGCAAATGAGGCGACGATTAGGAAGCAATACCGGAAGTATGCTCTTCTACTTCATCCTGATAAAAACAAATTTATTGGTGCGGAAGCTGCTTTCAAGTTGGTTGGTGAAGCTCAACGAGTGCTGTTGGACCAAGAGAAACGTCGATTGCATGATATGAGACGCAGACCAGCTATACCGTATCAACCTCCACATAGAGCTGCTTCATCCTTTAATGTCGGGGTTCAAGCTAATTTCAGAAGCAACTTTACGAGCTTCATTCCTCAGCATCAGCCGCCTCAACAGCAAGGACACTCGGGGTTCAGTCATAATCGTGCGACTTTTTGGACTGTCTGTCCATTTTGTTCAGTGAGGTACCAGTACTATAAAGAAGTGGTTAATAGATCACTATGCTGTCAGAATTGCAAGAAGCCCTTTGTTGCATATGATATGGAACTACAAGGGGCTCACCCTCAACCCATGTCGAACTTGAACCAGGCATCATTTTTCCAGCAGCAGAATTCCTTCAATCACAAGGCTGATACGGGACGCCCGGGAAACTCTCAGTCTGACAAGCGTCGGAGGACACGCAGCACCTCAGCTGCTGCTTCAGAAAAATTCACCGGTAAAAAGAAAAGGAAGCAGACTTCTGAATCTAGTGAGAGTTTTGATACGGGAACCAGCTCCGATCAAGAGGAAAATGTTGTTACTGATGAAGATAGCAGAAAGGATGTTGGTTGCTCGGGAGAGCAACGTCAGCGTAGATCGGTTCGAAGCAGGCAGAAGGTTTCTTACAATGAGAATGTAAGTGATGATGACAACGATGACTTTGTGATCACTCTAAAAAAATCAAAGAGAAGAAAATCATCAATCGTTTCTGACGATGATGTTGAAGAAGTATATGTAGATGGGGCATCTAAAATCAATAACCATTACAGATCTGTTGATTTGGATGCTGATCGGAAGGAAGTTAATAAGCAAGAAAATCATTGCTCTGAACGGAATTTATCGCATAGAAACAAGGGAAGTAAGAAGGCGAGTCATAAAGAAACGGCAGATAAGGATGTTTCTCAGGGAAGCATGGAGTCAGCTGGTGATACCAAGTGTAATTTTCTTTCATGTTCTGATCCCGATTTCCATGATTTTGATAAACTGCGGAATCGAGAATGTTTTGCTCTCGGGCAGATCTGGGCTATGTATGATGATATTGATACTATGCCTAGATTCTATGCTTGGATCAAGAAAGTGTTTCCTTCTGGATTCAAGGTCCAAATCACTTGGCTCGAGCCAGAAGTAACCGATGATGGCCGAAGAAAATGTGTCAATAAAGAAATGCCAATTTCCTGTGGTGAGTTTGTTTTCGGAGAAACTGAAACCATGACAGATTGTGGTTCGATGTTTTCTCATGCTGTTTCTTGGGACAAAGGCTGTCGTAAAGACAGTTTCAAGATTTATCCAAGGAAAGGGGAAATTTGGGCTCTTTTCAAGAACTGGGATAAGAACAGTAACTGTGATTCCAATAGCCGATACGATTATGAGTTTGTTGAGACATTATCGGAATTTACCGAAGAAGCTGGTATCGATGTTGCATTCTTAGCTAAGGTAAAAGGATTTTCGTGTCTCTTTTGTCGAATGGTCAAGGAAGGAGGAAAACCAGTTAGAGTCCCTGCAGCTGAGTTGTTCAGATTTTCGCATCGGATTCCTTCATTTCCACTCACCGGTGACGAACGAGAGGATGTTCCAGAAAATTCTTTGGAACTTGACCCAGCTGCTCTTCCCCCCAATGTTCCTGAAATTGTGATCCCTGTACAATTAAACGAGATGGCCGCTGCTGCTGATATTAAGACAGGTCTCCGGTCTGAGAGCGATGATGGTAATGTACCTGTAGCTTCGTCGGGCGAGGCTTATGAGATTCCAGATCCTGAATTTCACAACTTCGATGTCAACAAATCTTCTGAGAAGTTTGGCATTGGTCAGGTCTGGGCACTGTACAGTGACGAGGATGCCTTGCCGAGGTACTATGGTCTGATCAAGAAGATAACTCGTGAACCACGGTTCGAAGTGAAGTTGACGTGGCTCGAGTCCTCAGCACTGCCAAATGACACTATCGAATGGCACGATAAAGGCATGCTGATTCCTTGTGGGAGATTTAGAACTCAAAGGAGGACTATCATGCACTGCTGCACTTCCACCGATCCCTTTTCACATCTGGTTAGAACTGATTCTGCTCCTAATAGTGGCTTCTCCATCTTCCCTAGAACTGGCGAAGTTTGGGCATTATACAAGAACTGGACTCCTGAAATCAGATCTTCAGATTTAGAAAAATGTGAATACGATATAGCAGAAGTCATCGACGACGACGATTCACAAAAAGAAGTTATGGTCTTGAACCGCATCGATGGCCATAACTCGATCTTTAAGGCTCAAACCAAAAACGATGGTTCCACACTCACTATGATAATTCCTCAAGCCGAGCTTCTACGATTCTCTCATCAGATACCTGCTTTTCGGTTGACAGACGAGCTGGGTGGTAGCTTGAGAGATCAGATTCCTCACTCTCTCACTCTATTTTTCCCGCCAAAACCCTCGCGGTCCCTCCCTTCTTCCCGCCATATCTTTCACATTCCAATCCTACTTCTTAAGCCCTCTTCCGATTTGCTTCTCCGGCGCCGACAAACTATCTCCGGCTTCGCTCCCCCGGCGGCAGAAGAATTGAAAAGGACTCCCTTCTGGAGTGATCGCGTGGGCATTGATTGTACGGATACAGAAGTCTTTGACGGCCATCTTTCACCGCCTACATGTTCTGGTGAGGAACCCGATAAAGCTTCGTGTTCTTCAGGAACAGTTGACTTTTATAATGACATTTTTGAAACTCAAGTAGTGAATCCTGTAAGTAATGAGTTTGAGACTCAATTAGTGGATCCCCTTGGAGAAACTCAAGTGTTTGATGTTGCGCGTGAAACCCAAATCTCGAGTCTCGGTGGTGAAACCCAGGAACTTGATGATCCCATTCCTGATTGCGTCAAGAATATGAACTTCGACACTCAAATATTGAATGATTCTGATGGTGAAGAGGCTGGAGATTGCTATGATGATGAAGGAACAAAGACAACTGAAATTAATGTTCATGACGATCTATCCGGCGATGAATCAGCCCAAAGTTATGATCAAATGACCTCTCTCCGTGGACATGATGCGTGGAAAGATTTAGAGGTACTACCGGACACGTTGCCTGATCAAAAATATAATTCAGGACTCACACGACTTGCTTCAACTCGTGCAGCCTCATTGCGTGCCTCTGGTTTAGCAGCCCGTAGTTCTGCCATGAAGACGAGAAGCCCCTGGTCTTCTTCTGTTATGATTGACAAGAGTATAGAAAAATCATCCTTAAAAGGTTATCACGTTGATTGGCAGAGTGATGTTGGGCAATTCTGTGAGATTGATGGAGATTCAAGTAACATTAAGTGCAGAGCTTCGATTCGTGTGGCCTCATTGCGTGCCTCTGGTTTAGCTGCCATGCAGACTAGAAACCCCACACATTCGGTTATGACCGACAAGGATGTAGGAAAATCATCCTTAAAAGATAATCATGTTGAGCGGCAGGCCGATCTTAAGTGCAGGGCTGGCAGTTCAGCAGCGAGAAAGCTTTTTGCTGATGATTATATACCTGTTGGAGATTTAGGAGATCTCGACACAAGCCATGGTGTCAGTGACGTTGACCCGCATCGTTTGTCTGCATGTGATGGTGATCAGTTGGCAGGGTTAAGCTATGTCGACTCTCAAGAACCAGGGGATTTGACTCAAGACAATGCTCTTGATTTTGTTGAAAAGTTTCTTAAAGATAATTCTATGGAGTTTGATCATGGAGGAGGAACCCGTAAATTGGACGATATGGTGCAACCAAAGTCTGTTCCTAACACAAAAGGACAATATAATCTGGCTAACATTGTTAATTGTATGAGAACAGTTGGAGAATCGAGAGTTTTTGACTGGGACGATAATCGAGAAGATGAAGGAGGTGGAGATCTTTTCTGCAGAAGGAAGGAAGAGTTCTTCACCGAACCTCGAAATTTGAAAGGAAAACGAGTAGACTTGAATGGTGACTGGGAAGAATGTTTGAGTATAAAAAATATGAAATCGAGGTTATTTTATTCTGATTCACGTCTAGAGTTGAGTAAAGGAAACGAGAACGAATCAGCCCGAGACGCCAACGTCAAATGCAAAAAGAACCTATCCAATAAGTTGGATCAGCAGAATGATGGCGAAGCATGTTCGGGAGAGTTGGAAGACAATGGCGTCGATGATCAACAAGAAGTCTCTAATGTGGGTTTCGATACACAGATGGCAGCTGAGGCAATGGAAGCATTATTCCATGATGAGAGTATCCATAAGTTAGTTCATAATAGTAGTCCAAAGGACTCTGTCAGAGGTTCTCCTTTTAGAAAGGCAGACTCGAGCTCAAAATCAAGGCGATCTGCTAAGGGACATGCTTGTAGTTCTCGGGTTGCCCCTAGGCAGTCGAAAAAAAGAAACCAGAAGTTTTCTGGAACTCTCAGGAACGTGTGTGGAACCGAGACTGTGAAATTGTCGGAGTGGAGTAAGAAAAGAGACGCTGATGGAATTGGCCATGACTCTATTAATGGATGTAACACGGTTCAGAAGCAGCTTTTACGTGGAAAAATCGTTGAGGTTTCACCTGTTGCACATCGAACAAGGAATTCGATGATGCTAAATCAATCGAAAAAGGCTAAGATTACATCTGGTGAACGTGAGTGGTCGGTTACAAAGGTAGGTTCATCAATCAAGAAAAGTTGTGGTGATAGAGCCAATCGGGATTCTAAAGCAAAGAGAACAAAATCTTTAGAGGCTGCATCCGAGATTCTCGAAACGAAGTCGAAAGGCTCTGAAAATCGAGCAAAACGCTCCATAGGAGACCAAAAATCTTGTGATATGTTAGTTGGTCCCGTAAGTCTGTGTGAAGATTTACTTGGACGAACTATGAATAAGCGCACGAGGTCGTGTAACATGAAGAAAACACGATCATCACCTCGTTTAAATGAGAACTTGGAAAGACTAACCAATGGTAGATTGTCCATTGAAGATTCTAACGGGCCAAATTCTGTTCAGCAGTTAAAGAAAGAAAACGATGGATGTTCGGTTTCTTCTATTGTAAACACTACGGTCGATACATTTCCGAGTAAAAGGCATAAACCATCCGACACAGTTTGTGCTACTCCGCCCGATAACTGTAGGACGCCTATAAATGCTGCATCACCTGTTTGTATGGGCAGTGAATATTACAAACAATCATGCAAAAAGGGCCTCTCGAAACCAAATCTTTTGAAAGAACTTCGTGATTTAACAGCTCCCGGTTTTCTATCAGGATCATTTCGTACTGAATCGAGGAAGAGAAAAGATATGAATGAGGTTCGAGTCTTGTATAGCCAACACCTTGATGAGGACATAATCAAACAGCAAAAGAAGACATCGACTCGCCTAGGGGTTACTGAGGTATCGTCCATGACCGAGGCAACACATTTCGTTGCCGATAAATTTGTACGTACGAGGAATATGTTAGAAGCCATTTCTCTGGGTAAGCTTGTGGTGACACACCTATGGATTGAGAGTTGTGGACAGGCAAGCTGCTTCATTGACGAAAAAAACTACCTCCTACGAGACGCCAAAAAGGAGAAGGAATTTGGCTTTAGAATGCCAGGTTCTTTGGCATGTGCTCGCCAGCGTCCTCTTCTCGAGGGTCGACGCGTGTTGATTACTCCAAATACAAAGCCTGGGAAAGACGTCATTTCGAGATTGGTCAAGGCAGTAAAGGGTCAAGCATTTGAAAGAATCGGGAGGTCTATGCTGAAGGATGATCAAATTTCAGATGATTTGTTGGTTTTGTCGTGCGAAGAAGATTACAATTTGTGCATGTCTTTTCTTCAAAAAGGCGTCTCGGTATATAGTTCTGAGTTGTTACTTAATGGGATCGTAACCCAGAGGCTTGAATTTGAAAGGCATCGTCTTTTTGTAGATCATGTCAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGGTGGAAATAAGTTTCATCCTGTTACCAAACATCGATAA 6318 43.54 MDCNKDEAIKAREIAEKKMESKDFTGARKLVLKAQQLNPDAENISQMLMVCDVHCAAEKKLLGNEMDWYAILQIEQTANEATIRKQYRKYALLLHPDKNKFIGAEAAFKLVGEAQRVLLDQEKRRLHDMRRRPAIPYQPPHRAASSFNVGVQANFRSNFTSFIPQHQPPQQQGHSGFSHNRATFWTVCPFCSVRYQYYKEVVNRSLCCQNCKKPFVAYDMELQGAHPQPMSNLNQASFFQQQNSFNHKADTGRPGNSQSDKRRRTRSTSAAASEKFTGKKKRKQTSESSESFDTGTSSDQEENVVTDEDSRKDVGCSGEQRQRRSVRSRQKVSYNENVSDDDNDDFVITLKKSKRRKSSIVSDDDVEEVYVDGASKINNHYRSVDLDADRKEVNKQENHCSERNLSHRNKGSKKASHKETADKDVSQGSMESAGDTKCNFLSCSDPDFHDFDKLRNRECFALGQIWAMYDDIDTMPRFYAWIKKVFPSGFKVQITWLEPEVTDDGRRKCVNKEMPISCGEFVFGETETMTDCGSMFSHAVSWDKGCRKDSFKIYPRKGEIWALFKNWDKNSNCDSNSRYDYEFVETLSEFTEEAGIDVAFLAKVKGFSCLFCRMVKEGGKPVRVPAAELFRFSHRIPSFPLTGDEREDVPENSLELDPAALPPNVPEIVIPVQLNEMAAAADIKTGLRSESDDGNVPVASSGEAYEIPDPEFHNFDVNKSSEKFGIGQVWALYSDEDALPRYYGLIKKITREPRFEVKLTWLESSALPNDTIEWHDKGMLIPCGRFRTQRRTIMHCCTSTDPFSHLVRTDSAPNSGFSIFPRTGEVWALYKNWTPEIRSSDLEKCEYDIAEVIDDDDSQKEVMVLNRIDGHNSIFKAQTKNDGSTLTMIIPQAELLRFSHQIPAFRLTDELGGSLRDQIPHSLTLFFPPKPSRSLPSSRHIFHIPILLLKPSSDLLLRRRQTISGFAPPAAEELKRTPFWSDRVGIDCTDTEVFDGHLSPPTCSGEEPDKASCSSGTVDFYNDIFETQVVNPVSNEFETQLVDPLGETQVFDVARETQISSLGGETQELDDPIPDCVKNMNFDTQILNDSDGEEAGDCYDDEGTKTTEINVHDDLSGDESAQSYDQMTSLRGHDAWKDLEVLPDTLPDQKYNSGLTRLASTRAASLRASGLAARSSAMKTRSPWSSSVMIDKSIEKSSLKGYHVDWQSDVGQFCEIDGDSSNIKCRASIRVASLRASGLAAMQTRNPTHSVMTDKDVGKSSLKDNHVERQADLKCRAGSSAARKLFADDYIPVGDLGDLDTSHGVSDVDPHRLSACDGDQLAGLSYVDSQEPGDLTQDNALDFVEKFLKDNSMEFDHGGGTRKLDDMVQPKSVPNTKGQYNLANIVNCMRTVGESRVFDWDDNREDEGGGDLFCRRKEEFFTEPRNLKGKRVDLNGDWEECLSIKNMKSRLFYSDSRLELSKGNENESARDANVKCKKNLSNKLDQQNDGEACSGELEDNGVDDQQEVSNVGFDTQMAAEAMEALFHDESIHKLVHNSSPKDSVRGSPFRKADSSSKSRRSAKGHACSSRVAPRQSKKRNQKFSGTLRNVCGTETVKLSEWSKKRDADGIGHDSINGCNTVQKQLLRGKIVEVSPVAHRTRNSMMLNQSKKAKITSGEREWSVTKVGSSIKKSCGDRANRDSKAKRTKSLEAASEILETKSKGSENRAKRSIGDQKSCDMLVGPVSLCEDLLGRTMNKRTRSCNMKKTRSSPRLNENLERLTNGRLSIEDSNGPNSVQQLKKENDGCSVSSIVNTTVDTFPSKRHKPSDTVCATPPDNCRTPINAASPVCMGSEYYKQSCKKGLSKPNLLKELRDLTAPGFLSGSFRTESRKRKDMNEVRVLYSQHLDEDIIKQQKKTSTRLGVTEVSSMTEATHFVADKFVRTRNMLEAISLGKLVVTHLWIESCGQASCFIDEKNYLLRDAKKEKEFGFRMPGSLACARQRPLLEGRRVLITPNTKPGKDVISRLVKAVKGQAFERIGRSMLKDDQISDDLLVLSCEEDYNLCMSFLQKGVSVYSSELLLNGIVTQRLEFERHRLFVDHVKRTRSTIWLKKGGNKFHPVTKHR 2105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1615159 1624768 - CmaCh17G003020.1 Cma17g00302 312197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00302 2105 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 700 916 - -
Cma17g00302 2105 CDD BRCT_MDC1_rpt1 1879 1953 - -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 1485 1504 - -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 387 433 - -
Cma17g00302 2105 Gene3D DnaJ domain 64 175 IPR036869 -
Cma17g00302 2105 SMART BRCT_7 1983 2068 IPR001357 -
Cma17g00302 2105 SMART BRCT_7 1873 1950 IPR001357 -
Cma17g00302 2105 PRINTS DnaJ domain signature 87 102 IPR001623 -
Cma17g00302 2105 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cma17g00302 2105 PRINTS DnaJ domain signature 103 123 IPR001623 -
Cma17g00302 2105 ProSiteProfiles BRCT domain profile. 1912 1960 IPR001357 -
Cma17g00302 2105 Pfam DnaJ domain 67 128 IPR001623 -
Cma17g00302 2105 SUPERFAMILY Chaperone J-domain 64 158 IPR036869 -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 304 343 - -
Cma17g00302 2105 Gene3D BRCT domain 1864 1983 IPR036420 -
Cma17g00302 2105 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Cma17g00302 2105 PANTHER - 1 696 - -
Cma17g00302 2105 PANTHER - 700 916 - -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 387 425 - -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 1546 1560 - -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 254 288 - -
Cma17g00302 2105 SMART dnaj_3 66 123 IPR001623 -
Cma17g00302 2105 CDD BRCT_PAXIP1_rpt6_like 1985 2071 - -
Cma17g00302 2105 CDD DnaJ 67 120 IPR001623 -
Cma17g00302 2105 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 696 - -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 246 343 - -
Cma17g00302 2105 Pfam Domain of unknown function (DUF3444) 704 910 IPR024593 -
Cma17g00302 2105 Pfam Domain of unknown function (DUF3444) 441 645 IPR024593 -
Cma17g00302 2105 Gene3D BRCT domain 1984 2085 IPR036420 -
Cma17g00302 2105 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 1870 1960 IPR001357 -
Cma17g00302 2105 SUPERFAMILY BRCT domain 1869 1976 IPR036420 -
Cma17g00302 2105 MobiDBLite consensus disorder prediction 1536 1586 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00302 - - - bhj:120092937 1507.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01199 Cma17g00302 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00302 Cma-Chr17:1615159 Cma17g01136 Cma-Chr17:7906696 3.09E-11 dispersed
Cma07g01348 Cma-Chr7:7674427 Cma17g00302 Cma-Chr17:1615159 2.09E-15 transposed
Cma10g01107 Cma-Chr10:7420443 Cma17g00302 Cma-Chr17:1615159 5.54E-30 transposed
Cma17g00302 Cma-Chr17:1615159 Cma08g01199 Cma-Chr8:7360260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00302 Cma_Chr17 FPKM 4.874942 5.478482 6.751645 7.226876 8.050117 7.924098 8.152702 7.70372 6.674526 6.99684