Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00306 ATGTCTCTGAAGAGTTTCTTTCTAGATATGAGGTCCCGCTCCCGCCCTGTAGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACCTGGAACACAGCGGTTGGGCCAATATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTTATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGCGAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGCCTGGTCCAAGGGATAATATTCTACGGTGTTTCATAAAGCGAAACAGCTCCAACCAGACCTATTATCTCTTCCTCAATTTGACAAATGCACTAACTGAGGATGGTAAATTTCTACTTGCTGCTCATAAATGGAAGCGCCCGACCTACACTGATTACGATATCTCTTTGTGTGCTGAGGATTCGTCGAAGGGGAGCGACACCATTGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATAAGCAACCATCACATTCTGAAGCCAAGATCACGAAAAGCACGAAAAGCACGCAAAGTCGCTCCTCAAGGCCAGTGCATCTGAATGAAGTTTCATCCAATGTCCCTTCAGGAAACTACCCTGTTGCTCACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAGTGTGTCATGGACGCCATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTTGCTCCCACGCTGGCTGAGCTTTCTTTGAGGAATATCGAATTGATTCCATCATTCCCTTTTTGGAGGTTGAATTCAGATATGGATAGCTTGATGTGTAAACCTTCGGACAGTCAGGAAGATGGAATATTGATGCTGAGAAACAAAACTCCCCGGTGGCACGAGCAGCTTCAATGCTGGTGTTTAAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCGTCTAGGGAAGACGAACAACCTACAGACGATCATGACACGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCTGGCTTTCGCAATCTGCCTCAGCAGCATTGACACCAAGATTGCTTGTGAATGA 1179 47.07 MSLKSFFLDMRSRSRPVVQDSSAPEPRDDLEHSGWANMPSELLRDIFMRIEESEALWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQPGPRDNILRCFIKRNSSNQTYYLFLNLTNALTEDGKFLLAAHKWKRPTYTDYDISLCAEDSSKGSDTIVGKLRSNFLGTKFTIFDKQPSHSEAKITKSTKSTQSRSSRPVHLNEVSSNVPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGVAPTLAELSLRNIELIPSFPFWRLNSDMDSLMCKPSDSQEDGILMLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASREDEQPTDDHDTIILQFGKVGKDLFTMDYRYPISAFLAFAICLSSIDTKIACE 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1640574 1643658 + CmaCh17G003060.1 Cma17g00306 312201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00306 392 MobiDBLite consensus disorder prediction 192 215 - -
Cma17g00306 392 SUPERFAMILY Tubby C-terminal domain-like 85 392 IPR025659 -
Cma17g00306 392 Gene3D Tubby Protein; Chain A 92 392 IPR025659 -
Cma17g00306 392 Pfam F-box domain 35 83 IPR001810 GO:0005515
Cma17g00306 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Cma17g00306 392 MobiDBLite consensus disorder prediction 190 215 - -
Cma17g00306 392 Pfam Tub family 96 387 IPR000007 -
Cma17g00306 392 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cma17g00306 392 PRINTS Tubby superfamily signature 221 248 IPR000007 -
Cma17g00306 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Cma17g00306 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Cma17g00306 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Cma17g00306 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Cma17g00306 392 PANTHER TUBBY-RELATED 1 392 - -
Cma17g00306 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 392 - -
Cma17g00306 392 SUPERFAMILY F-box domain 30 79 IPR036047 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01463 Cma17g00306 CCT
Cma14g01645 Cma17g00306 CCT
Cma14g01645 Cma17g00306 ECH
Cma06g01463 Cma17g00306 ECH
Cma08g01203 Cma17g00306 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00306 Cma-Chr17:1640574 Cma01g01013 Cma-Chr1:7423924 4.99E-143 dispersed
Cma14g01645 Cma-Chr14:12300711 Cma17g00306 Cma-Chr17:1640574 0 wgd
Cma17g00306 Cma-Chr17:1640574 Cma06g01463 Cma-Chr6:9347211 0 wgd
Cma17g00306 Cma-Chr17:1640574 Cma08g01203 Cma-Chr8:7397977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36640 PF01167 Tub 1.00E-101 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00306 K19600 - csv:101203437 592.038