Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00306 | ATGTCTCTGAAGAGTTTCTTTCTAGATATGAGGTCCCGCTCCCGCCCTGTAGTGCAGGACAGCTCCGCTCCGGAGCCGAGGGACGACCTGGAACACAGCGGTTGGGCCAATATGCCTTCGGAGCTTCTCAGGGATATTTTTATGAGAATCGAGGAGTCGGAGGCCTTATGGCCGCTGAGGAAAAGTGTCGTCGCTTGCGCCGGAGTTTGTCGGAGCTGGCGAATCATTTCTAAGGAGATCGTCCTAACGCTGGAGGTTTCCGGCAGGTTGACATTCCCAATCTCTCTCAAGCAGCCTGGTCCAAGGGATAATATTCTACGGTGTTTCATAAAGCGAAACAGCTCCAACCAGACCTATTATCTCTTCCTCAATTTGACAAATGCACTAACTGAGGATGGTAAATTTCTACTTGCTGCTCATAAATGGAAGCGCCCGACCTACACTGATTACGATATCTCTTTGTGTGCTGAGGATTCGTCGAAGGGGAGCGACACCATTGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATAAGCAACCATCACATTCTGAAGCCAAGATCACGAAAAGCACGAAAAGCACGCAAAGTCGCTCCTCAAGGCCAGTGCATCTGAATGAAGTTTCATCCAATGTCCCTTCAGGAAACTACCCTGTTGCTCACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAGTGTGTCATGGACGCCATTCCCGCTTCTGCGGTTGAACCTGGAGGAGTTGCTCCCACGCTGGCTGAGCTTTCTTTGAGGAATATCGAATTGATTCCATCATTCCCTTTTTGGAGGTTGAATTCAGATATGGATAGCTTGATGTGTAAACCTTCGGACAGTCAGGAAGATGGAATATTGATGCTGAGAAACAAAACTCCCCGGTGGCACGAGCAGCTTCAATGCTGGTGTTTAAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCGTCTAGGGAAGACGAACAACCTACAGACGATCATGACACGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCTGGCTTTCGCAATCTGCCTCAGCAGCATTGACACCAAGATTGCTTGTGAATGA | 1179 | 47.07 | MSLKSFFLDMRSRSRPVVQDSSAPEPRDDLEHSGWANMPSELLRDIFMRIEESEALWPLRKSVVACAGVCRSWRIISKEIVLTLEVSGRLTFPISLKQPGPRDNILRCFIKRNSSNQTYYLFLNLTNALTEDGKFLLAAHKWKRPTYTDYDISLCAEDSSKGSDTIVGKLRSNFLGTKFTIFDKQPSHSEAKITKSTKSTQSRSSRPVHLNEVSSNVPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGVAPTLAELSLRNIELIPSFPFWRLNSDMDSLMCKPSDSQEDGILMLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASREDEQPTDDHDTIILQFGKVGKDLFTMDYRYPISAFLAFAICLSSIDTKIACE | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 1640574 | 1643658 | + | CmaCh17G003060.1 | Cma17g00306 | 312201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00306 | 392 | MobiDBLite | consensus disorder prediction | 192 | 215 | - | - | |
Cma17g00306 | 392 | SUPERFAMILY | Tubby C-terminal domain-like | 85 | 392 | IPR025659 | - | |
Cma17g00306 | 392 | Gene3D | Tubby Protein; Chain A | 92 | 392 | IPR025659 | - | |
Cma17g00306 | 392 | Pfam | F-box domain | 35 | 83 | IPR001810 | GO:0005515 | |
Cma17g00306 | 392 | ProSitePatterns | Tub family signature 1. | 322 | 335 | IPR018066 | - | |
Cma17g00306 | 392 | MobiDBLite | consensus disorder prediction | 190 | 215 | - | - | |
Cma17g00306 | 392 | Pfam | Tub family | 96 | 387 | IPR000007 | - | |
Cma17g00306 | 392 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Cma17g00306 | 392 | PRINTS | Tubby superfamily signature | 221 | 248 | IPR000007 | - | |
Cma17g00306 | 392 | PRINTS | Tubby superfamily signature | 304 | 321 | IPR000007 | - | |
Cma17g00306 | 392 | PRINTS | Tubby superfamily signature | 322 | 338 | IPR000007 | - | |
Cma17g00306 | 392 | PRINTS | Tubby superfamily signature | 349 | 368 | IPR000007 | - | |
Cma17g00306 | 392 | PRINTS | Tubby superfamily signature | 370 | 392 | IPR000007 | - | |
Cma17g00306 | 392 | PANTHER | TUBBY-RELATED | 1 | 392 | - | - | |
Cma17g00306 | 392 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 392 | - | - | |
Cma17g00306 | 392 | SUPERFAMILY | F-box domain | 30 | 79 | IPR036047 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01463 | Cma17g00306 | CCT | |
Cma14g01645 | Cma17g00306 | CCT | |
Cma14g01645 | Cma17g00306 | ECH | |
Cma06g01463 | Cma17g00306 | ECH | |
Cma08g01203 | Cma17g00306 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma17g00306 | Cma-Chr17:1640574 | Cma01g01013 | Cma-Chr1:7423924 | 4.99E-143 | dispersed | |
Cma14g01645 | Cma-Chr14:12300711 | Cma17g00306 | Cma-Chr17:1640574 | 0 | wgd | |
Cma17g00306 | Cma-Chr17:1640574 | Cma06g01463 | Cma-Chr6:9347211 | 0 | wgd | |
Cma17g00306 | Cma-Chr17:1640574 | Cma08g01203 | Cma-Chr8:7397977 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36640 | PF01167 | Tub | 1.00E-101 | CL0395 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00306 | K19600 | - | csv:101203437 | 592.038 |