Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00308 ATGGACGGCCAGAGGAAGGCCGGATTCGGCGTATCGGACGGATCGGAGACGACGACGATGGCTAGGTTTTGTGATTTGATTTTGAGATTTGTGGCGATGATTTTGACTTTGGCTGCTGCTGTCGTTATCGGCGTCGATAAGCAGGCGAAAACGGTGTCGCTTCAACTCACCGCCGCGTTGCCGCCGCTGCGCATTCCTGTTACTGCACGATGGCATTATTCATCTGCCTTCGTGTACTTTGTGGTGGTAAATGCAATAGCATGTTCATACGCAGCCTTCTCGCTGGTTCTTTCAGCCGTAAACAAAGGCAAAGGCAGAAGAAGCTTTATAAGATCGGCGATCACCGTGATGGACCTTCTGACGGTGGCGCTGCTGTTTTCCGGCTTCGGAGCCGCCGCCGCCGTCGGCGTTATCGGCCTGAAAGGGAATTCACATCTTAATTGGAATAAAATTTGCGATGTATTTGGAAGATTCTGTGGCCAAGGAGCTGCTTCCCTTCTCCTCTCACTGCTTGGAGCGACGTCGTTTCTCTCTCTTGCTGTGCTTTCTGCTTTGAGGCTTCCAAGGGGATCCAATTGA 579 51.81 MDGQRKAGFGVSDGSETTTMARFCDLILRFVAMILTLAAAVVIGVDKQAKTVSLQLTAALPPLRIPVTARWHYSSAFVYFVVVNAIACSYAAFSLVLSAVNKGKGRRSFIRSAITVMDLLTVALLFSGFGAAAAVGVIGLKGNSHLNWNKICDVFGRFCGQGAASLLLSLLGATSFLSLAVLSALRLPRGSN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1650252 1652050 - CmaCh17G003080.1 Cma17g00308 312203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00308 192 PANTHER CASP-LIKE PROTEIN 1E1 16 189 - -
Cma17g00308 192 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 26 186 IPR006459 -
Cma17g00308 192 Pfam Casparian strip membrane protein domain 21 173 IPR006702 -
Cma17g00308 192 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 16 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00308 - - - csv:101221959 261.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01468 Cma17g00308 CCT
Cma06g01468 Cma17g00308 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01469 Cma-Chr6:9366931 Cma17g00308 Cma-Chr17:1650252 1.09E-39 dispersed
Cma08g00391 Cma-Chr8:2237769 Cma17g00308 Cma-Chr17:1650252 3.39E-43 dispersed
Cma10g00033 Cma-Chr10:118583 Cma17g00308 Cma-Chr17:1650252 2.51E-18 dispersed
Cma13g00453 Cma-Chr13:5039994 Cma17g00308 Cma-Chr17:1650252 3.40E-20 dispersed
Cma17g00308 Cma-Chr17:1650252 Cma17g01127 Cma-Chr17:7862267 9.31E-47 dispersed
Cma19g00986 Cma-Chr19:8580878 Cma17g00308 Cma-Chr17:1650252 2.80E-15 dispersed
Cma14g01642 Cma-Chr14:12281741 Cma17g00308 Cma-Chr17:1650252 3.89E-08 wgd
Cma17g00308 Cma-Chr17:1650252 Cma06g01468 Cma-Chr6:9365143 1.97E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g354 . . . . . Bpe14g01146 . . . . Cma06g01468 . Car06g01266 . Sed02g1218 Cpe08g00212 Cpe03g01385 Bhi01g00955 Tan10g0954 Cmetu06g2743 . . . . . . . . . . . Cone14ag0781 Cone15ag0786 Cone7ag0173 Cone4ag0171 Lsi05g01505 . Chy11g01476 Cme06g00692 Blo02g00583 Blo07g00187 Bda11g00539 Bda13g00165 . . . Bma06g01517 . Cmo06g01468 Cmo14g01684 . Cma17g00308 . Car17g00284 . . . . . . . . . Cla05g00617 Cam05g0679 Cec05g0689 Cco05g0684 Clacu05g0673 Cmu05g0641 Cre05g0713 . Csa03g01418 Chy06g00659 Cme11g01983
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001008 3 4 2 1 1 3 4 3 3 3 2 3 3 3 3 4 3 4 4 3 3 2 3 0 3 4 3 2 3 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00308 Cma_Chr17 FPKM 0.0 0.0 0.0 0.112859 0.0 0.0 0.245453 0.0 0.195719 0.0