Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00313 ATGCGGTTCAAATTCGAAGGTGTTTTGCTTCATATTTTGGTGGGTTCTTGCTCCAGTTTATCTAGGGCTAGTTTTTTTCTTCCTGTTGTGTACAATTCCGCTCTTCTACGCAGGCAATGGCAGCTAGAACTTCTGATTTTTGATTGCCGAATGTATTGTGGTTTAAATTCATGGGACGCGGTAGAAGTTTCATTGCCTGAAGACTACATTTGGGGAATTCTCTCATCGATTGAGCGGCGGATGTTTGCTTCCAGTATGGATACTGTGCGGGACACAGCTAGAAATGCAGGAACGTTGTTAATCCCAATGCGGTTTGTCTGGCCGTATGGGGGAAGAAGTGTATTTCTCAGCGGTTCTTTTACCAGGTGGTCGGAGCTTGTTCCTATGACGCCTATGGAGGGCTGTCCTACTGTTTTTCAGGCTATTTACAGCTTAACCCCTGGATATCACCAGTATAAATTTTTTGTTGATGGAGAATGGCGGCACGATGAGCAGCAGACTTGTATTTCTGGTGAATATGGGGTTGTAAACACTGTTCTCTTGGCTACAGAGCCTAGTTATGCTGCTCCACTTGCCAATCCAGAGATGGCCCCTGGATCTAGCATGGATGTGGATAATGATGCTGTCCGTCGCTTGGTCCGAATAAATGATGGACGATTGTCAGAGGCTGTGCATAGTATATCAGAGGCTGATCTGCAGTGCTCCCGTCACCGCATATCTGCATTCTTGTCCACACATACTGTTTACGAGTTGCTCCCGGAGTCAGGCAAGGTTGTTGCTTTGGACATTGACTTACCTGTGAAGCAAGCTTTTCATATATTGCATGAGCAGGCATGTCTTTTTTCTCCTTCCCTCACGTCCCCTCCGTTTGGCTGGTCGAGAACCCATACAACTGGTATCCCAACAGCTCCTCTTTGGGATTTCAGCAAGGGGCAATTTGTTGGAGTTCTCAGTGCTTCAGATTTTATTTTGATATTAAAAGAACTTGGGAAGCGTGGCTCAAACCTGACAGAGGAGGAGCTTGAAACACATACTATATCTGCTTGGAAAGAGGGTAAAGCATATTTGAATGGTCGAGTGGATGGGCAAGGAAGATTCTTGTCAAGACAGTTCATTCACGCTGAACCGTTTGATAATTTGAAAGATGTTGCTTTAAAGATCTTGCAAAATCAGGTGGCTACAGTTCCCATAATTCATTCATCTGCAGAAGATGGATCGTTTCCACAATTGTTGCATCTTTCTTCACTTTCTGGAATACTAAAATGTATCTGCAGGTACTTTAGGCATTGTTCCAGCCTGTTGCCTGTGCTCCAACTGCCAATTTTTGCAATTCCAGTTGGAACATGGGTCCCAAAAATTGGAGAATCGAATAGAAGACCATTAGCTATGTTGAGACCTAGTGCTTCCCTTAGCTCAGCGTTAAACTTACTGATTCAAGCTCAAGTTAGTTCGATACCCATAGTTGATGACAACGATTCATTGCTGGATGTATATTGCCGAAGTGATATAACAGCTCTTGCGAAGGACAGAGCTTATACACACATTAATCTTGATGAAATGACCATTCATCAGGCATTGCAACTTGGACAAGATTCTTTCTCTCTTTATGAGCCACGAAGTCAACGATGTCAGATGTGTTTGCGATCCGACTCGTTGCATAAAGTAATGGATCGTTTGGCAAACCCAGGTGTTCGACGGCTTGTAATTGTGGAAGCTGGCAGCAAACGAGTAGAAGGGATTATTTCGCTAAGTGACGTTTTCAAGTTCTTGCTTGCACATTTGGTTCAAAATTTTCAGCAATCTTCCGAACTAAGAACTGCTGAAACAAAAATGGAGGTTCCAAAGGATCAAATCTCCACTCTTCTCGACCTAGGGCTCTACAGTTCAGCTCACATGCTGGGTTGCTTTCTTGTTTCATCGCCTGCTGCTAATGTTGAATCCAGTCCTCACCTCAAGTCTGAGAGCTTGGTGCTTCTTGGGGATGCATTATTTCGAGAAAGGGAGTATCGAAGAGCAATTCATACTTACAAGCAAGCCCTGCAATACTATAAGATTATTCCTAAACAAAATTCAGCTACTATTAGAAGTTCTTTGCAGTCAAACAGGTCCTCTTCTCCAAACTCATTTAATGTATCGGCCGTTAATGAAAATGAGGTGAAGTTTAAAATTGCGTCGTGTTATTGTGCATTAAGTGACAACAGAGCTGCCCTTGTAGAGATGGAGGGAATTCCAAGTAAAGCAAGAAATTTACAAATGAATCTTTTGATGGGAAAGCTTTATAGATTTGCGAGGCATAACCGTGCTGCTATTGCATGTTACAAGGAGTGCTTAAGAAATTGTCCTTTTGTGTTTGAAGCTATTATAGCTTTAGCAGAACTTGGCGCTACTGCCAAAGACATCATTTCGTTGTTTCCTCAGACATCAAACAGAAGTGGCAAAACTCCTTTTGATCACTTTGACTCAAATCGCTGGCTGCCACGCTATGTTGAGGCCCAGTGCTGCATCGCGTCAAATGATTACAAAGGTGGTTTGGAGCTGTTTTTGGATTTATTGCAACGTTTTCCCAATAATATTCACCTGTTACTTGAAATTGCAAAGGTTGAAGCCATCATGGGAAAAAACGACGAGGCTATCATGAATTTTGAAAAGGCACGATCAATTGATCCATATCTTGTAACATATATGGATGAATATGCAATGCTTCTGAAGATGAAGTCTGATTATTCAATGCTAAACAAGTTAGTCTATGACTTGTTAAATATTGATTCTACAAGACCAGAAGTTTTTGTGACTTTGTCTGTATTGTGGGAAACAAAAGATGAGAGGGGAGCCCTGTCTTATGCTGAGAAGAGCATCCGAATTGATGAAAGGCATATAACAGGTTTCATCATGAAGGGAAACCTGTTATTAGCATTGAAGCAGCCAGATGCAGCCGTTAGTGCATTCAGGAATGCGCAAGAATTGAGACCCGATATTCGTTCATATCAAGGCTTGGTCCATTCTCATCTAGCTCTGTCTAAAATAAAAGAGGCATTATATGCTGCTCGGGAGGCAATGAAAGCGATGCCTCAATCTGCAAAGGCTCTAAAATTAGTTGGAGATGTACATGCTAGTAACTCAGGTGGTAGAGAGAAGGCCAAGAAGTTTTATGAGTCAGCCCTTAGGCTGGAACCTGGTTACCTCGGGTCGGCATTAGCTTTGGCAGAGCTCCATGTAATTGAAGGTCGAAACAGAGATGCTGTATCCTTACTGGAGAGGTACCTTAAGGACTGGGCTGATGATTCTCTTCACGTAAAACTAGCTCAAGTGTTTGCAGCCACAAATATGCTGCAAGATGCTTTATCTCACTATCAAGCTGCATTAAGGATGAATCCCCAGAACGAAGCTGCCAAGAAAGGTCTTGAGCGCTTAGAAAAACAAATGAAGGGAGTGGATCCTGATGCACCTGAAGACGACGAAGACAATGAGGTCGATGATGCCGACGGAGACCAAGAAGAAACCGAACTCTTATGA 3513 42.84 MRFKFEGVLLHILVGSCSSLSRASFFLPVVYNSALLRRQWQLELLIFDCRMYCGLNSWDAVEVSLPEDYIWGILSSIERRMFASSMDTVRDTARNAGTLLIPMRFVWPYGGRSVFLSGSFTRWSELVPMTPMEGCPTVFQAIYSLTPGYHQYKFFVDGEWRHDEQQTCISGEYGVVNTVLLATEPSYAAPLANPEMAPGSSMDVDNDAVRRLVRINDGRLSEAVHSISEADLQCSRHRISAFLSTHTVYELLPESGKVVALDIDLPVKQAFHILHEQACLFSPSLTSPPFGWSRTHTTGIPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNLTEEELETHTISAWKEGKAYLNGRVDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPIIHSSAEDGSFPQLLHLSSLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNRRPLAMLRPSASLSSALNLLIQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTIHQALQLGQDSFSLYEPRSQRCQMCLRSDSLHKVMDRLANPGVRRLVIVEAGSKRVEGIISLSDVFKFLLAHLVQNFQQSSELRTAETKMEVPKDQISTLLDLGLYSSAHMLGCFLVSSPAANVESSPHLKSESLVLLGDALFREREYRRAIHTYKQALQYYKIIPKQNSATIRSSLQSNRSSSPNSFNVSAVNENEVKFKIASCYCALSDNRAALVEMEGIPSKARNLQMNLLMGKLYRFARHNRAAIACYKECLRNCPFVFEAIIALAELGATAKDIISLFPQTSNRSGKTPFDHFDSNRWLPRYVEAQCCIASNDYKGGLELFLDLLQRFPNNIHLLLEIAKVEAIMGKNDEAIMNFEKARSIDPYLVTYMDEYAMLLKMKSDYSMLNKLVYDLLNIDSTRPEVFVTLSVLWETKDERGALSYAEKSIRIDERHITGFIMKGNLLLALKQPDAAVSAFRNAQELRPDIRSYQGLVHSHLALSKIKEALYAAREAMKAMPQSAKALKLVGDVHASNSGGREKAKKFYESALRLEPGYLGSALALAELHVIEGRNRDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQDALSHYQAALRMNPQNEAAKKGLERLEKQMKGVDPDAPEDDEDNEVDDADGDQEETELL 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1671286 1685240 - CmaCh17G003130.1 Cma17g00313 312208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00313 1170 Pfam Glycogen recognition site of AMP-activated protein kinase 101 183 IPR032640 -
Cma17g00313 1170 ProSiteProfiles TPR repeat profile. 653 686 IPR019734 GO:0005515
Cma17g00313 1170 Pfam Tetratricopeptide repeat 1065 1127 - -
Cma17g00313 1170 SUPERFAMILY E set domains 101 182 IPR014756 -
Cma17g00313 1170 Gene3D Tetratricopeptide repeat domain 615 761 IPR011990 GO:0005515
Cma17g00313 1170 Pfam Tetratricopeptide repeat 655 680 IPR019734 GO:0005515
Cma17g00313 1170 Gene3D Immunoglobulins 101 189 IPR013783 -
Cma17g00313 1170 SUPERFAMILY TPR-like 933 1129 IPR011990 GO:0005515
Cma17g00313 1170 SMART cbs_1 257 327 IPR000644 -
Cma17g00313 1170 SMART cbs_1 460 508 IPR000644 -
Cma17g00313 1170 SMART cbs_1 542 591 IPR000644 -
Cma17g00313 1170 SUPERFAMILY TPR-like 653 793 IPR011990 GO:0005515
Cma17g00313 1170 MobiDBLite consensus disorder prediction 1128 1170 - -
Cma17g00313 1170 SMART tpr_5 858 891 IPR019734 GO:0005515
Cma17g00313 1170 SMART tpr_5 1094 1127 IPR019734 GO:0005515
Cma17g00313 1170 SMART tpr_5 653 686 IPR019734 GO:0005515
Cma17g00313 1170 SMART tpr_5 824 857 IPR019734 GO:0005515
Cma17g00313 1170 SMART tpr_5 959 992 IPR019734 GO:0005515
Cma17g00313 1170 SMART tpr_5 1026 1060 IPR019734 GO:0005515
Cma17g00313 1170 SMART tpr_5 750 783 IPR019734 GO:0005515
Cma17g00313 1170 CDD E_set_AMPKbeta_like_N 102 180 - -
Cma17g00313 1170 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 92 591 - -
Cma17g00313 1170 Pfam CBS domain 458 504 IPR000644 -
Cma17g00313 1170 Pfam CBS domain 545 591 IPR000644 -
Cma17g00313 1170 MobiDBLite consensus disorder prediction 1147 1170 - -
Cma17g00313 1170 Gene3D - 441 609 IPR046342 -
Cma17g00313 1170 SUPERFAMILY TPR-like 828 992 IPR011990 GO:0005515
Cma17g00313 1170 ProSiteProfiles TPR repeat profile. 1094 1127 IPR019734 GO:0005515
Cma17g00313 1170 Gene3D Tetratricopeptide repeat domain 818 1143 IPR011990 GO:0005515
Cma17g00313 1170 SUPERFAMILY CBS-domain pair 237 429 IPR046342 -
Cma17g00313 1170 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 92 591 - -
Cma17g00313 1170 Pfam Tetratricopeptide repeat 963 991 IPR019734 GO:0005515
Cma17g00313 1170 SUPERFAMILY CBS-domain pair 457 594 IPR046342 -
Cma17g00313 1170 Gene3D - 228 433 IPR046342 -
Cma17g00313 1170 MobiDBLite consensus disorder prediction 1129 1146 - -
Cma17g00313 1170 ProSiteProfiles CBS domain profile. 456 513 IPR000644 -
Cma17g00313 1170 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00313 K03354 APC7, ANAPC7; anaphase-promoting complex subunit 7 - csv:101215365 1004.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01212 Cma17g00313 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00313 Cma-Chr17:1671286 Cma18g00143 Cma-Chr18:721750 2.26E-09 dispersed
Cma08g01216 Cma-Chr8:7450884 Cma17g00313 Cma-Chr17:1671286 0 transposed
Cma17g00313 Cma-Chr17:1671286 Cma08g01212 Cma-Chr8:7436149 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g345 . . . . . . . . Cmo08g01185 Cmo17g00301 . . . . . . . . . . . . . . Cla06g00496 Cam06g0533 Cec06g0533 Cco06g0537 Clacu06g0518 Cmu06g0520 Cre06g1290 . . . Cone4ag0164 . . Chy11g01482 . . Blo07g00184 Bda11g00536 . . Bpe13g00652 . Bma06g01514 Sed04g1816 . . Cma08g01212 Cma17g00313 Car08g01084 Car17g00286 . Cpe17g00008 Bhi12g02089 Tan06g2639 Cmetu11g0405 Lac12g2386 Hepe03g0119 . Lcy13g0194 . . . . . . . Lsi09g01409 . . Cme11g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008189 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00313 Cma_Chr17 FPKM 18.645317 19.216061 18.655022 19.145073 20.354893 20.701805 21.630762 20.797558 20.900576 20.70713