Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00314 ATGGATTCTGCTTCTCTGAAGAAGGGTTTCTGTTCTGTTTTTGGGAAGATGATTATTGGAACTAGGGTTTTGGGTTCACATTTAATGGTGGGCTCTGTGGAGCCGATGATTATTGGGGATTGCATTGACATGGAAGAAGGCGAAGCTTCTTGCTATCACAAGGAAAATGGCGGTGATATTGACCCTGACATTGCTCTCTCTTACATTGATGAGAAGATCGAGCGTTTTCTTGGTCATTTCCAAAAGGACTTTGAAGGTGGAGTTTCAGCTGAAAAGTTAGGTGCAAAGTATGGTGGTTATGGCTCATTTTTGCCTATGTACGAACGTGCTCCGTCCATTTTGCCACACAATATAAATCAACAAAGCGACTGCAATGCAATAGCACCAACTCCAGTTAATGTGCCCTTGGAGAATCCAAAAGCTCCGCTGCCGAAGAGGTCGGGAGCTATTGTCTGCAATGCTATTTCCTCTCACAATAAAGGGACAACTTCTGGGAGGGTAGATTCATTCTTACCTGCTACTAGAGTTACTAATAGCTACCCCTCGAAAGATGAAGCCACAGGCAGATTAGGCAGTCCAATGAGCAACAGATCGCTTAAATTTCGACTCAAAGTTGGTTCTGACAGCACTGCATTGAAAAATGCAGCGATATACAGTGGCCTTGGACTCGATGACTCTCCATTGTCGTCATCGGAAAACAGCTCCGACGTTAGTGAAGGGATGCTGCCCATTTCTCAAAGTTCACCAGACGAGTCTCCGACTAAGATAATTCAGGCAATGACTTCTTTGCCAGTGCCTCATGGAGCATTGATATCACCCCTTCATGATAGCCTTCTCGGGCTGTCGAGAAGGGAAAAACCGTTACGAGAAACCAAACCCGTGTTTTCCCTTGAGGATAAAAAAGATGGTTTGGCCAAGCTTGCCAGTGGGACGATTTTAAAGCAAAACGACAGTACATTGGTTAAGAAGAAGAAAAAGGAGATGGGGCATAAAGAACGGCAGGTCAATCCTAAGAATGAAGTTTATGCTTCTCGCTGTGAGGAGAAGACGGCTCTAACTCTCGTAAATGGAAAATCAGAAAACGAGGCTTTTGTAAGCAAGGATTTACTCTCTAATGAGTTGCAATGCAAACCCGGTTCCGAGGTTACTAAGTCCAATGCGTACTTAGACCCACAAAAGAAGAAGCTTTCTCGTAAACCTACACTACACGAAACAGACAAAGACAAAGCATCGATTAAGAAAGAAAAGCCCGGAATTGTTGGTGAGAAGAATTCGAAAGTTATACAGACTGCTGGTGGGAAAATAGCTGGTTCATTTGAGGAAGGCTTCAAGAATAGAAGTGAAGCATTCAAAGGTAGAAAGGACACTGATTCTGACACTCCAGAATCTGAAAATAGAAAGCACAGGTTAAAACTACACAGCAATGAGAAAGTAGGAACAAACAATGGGGATTCTTTTAACCGCATGGGGTTAGATGAAAACCGTAAAAGTAAGGATGTAATTGAAAGGGCCTCCGGTGACTTACAGAGGCTCGACGGCCTATATGACAGTGGAATCAAATCGTCTAAATCCTTGAAGGTGGCCGAACCAGCAGCAGGGGTGGCTCCTGTTGATGAATGGGTGTGCTGTGACATTTGTCAGAAATGGCGCCTTCTACCCTTCGGGACAAAACCCGATCAACTTCCTGATAAATGGTTATGTAGCATGCTCAATTGGCTGCCCGGGATGAACCGGTGTGACATTAGTGAGCAGGAGACGACGGAAAAGCTTTATGCTTTGTACCAGCTACCATTGCCTGAGAGTGGAAATGCTTTGCAGAGCCATGGCAATGGACTAATAGCAGGTGATACTTCAAATGAGGGAAAAAGGAAAGAAATACAAAATCCAGTAAGCAGAAATGGCCCGACTCTTGCAAAGAGTTCTTTGAAAGATCCTCTGCAGGAATCGAGGAAAAAAGGAAGTCTTTATGGCTCGAATAACGTTCCAAATCAGTTGAAAAATTCAACGGATCGATCTTCTAGTGACCTGCACAACTCGGTAGAGGGAAAGAACCGAGGTAAACTAAAAGAAAAATCGACTGAAAAAGCTAATTGCGACGTATTGAAAAGGAAGAACAAGAAACCGGAAGGCGTGCGCTCTGTCGACAGTCATCAAGACTTCAATATGGAGCTCGGAAAATTGGGTTGTAGTTCGAATTCTGGCTTGACAAATATGGAAGGTGGGGAAGGTATGTTAAAGAAGCCCAACAAATCTAACACAGAGAATAAAATGCAAATTTCATTGAAGAAACGTGGAGAAACAGCTGAGATCACAAAGAAAAGGAAAGCGAAGGATTGGCAGGATGATCAAAATTCTCATAACAGTGCACTACTCCATGAACCCGTGCGTTCGAAGGAAGAAAGTTGTGAAAGGTCGAAGAAGAAAAAGAGGTTTGATCGTGTCGAAGAAATCAGCCATGATAAGGATAACGAGCCGAAAATGCAAAATAAGAAGAATTTTGCTAAACAAACGTCTGTCGGTAAGGAGTTACTGAAGAGAAGTTTAGTTGCTCGACAAGTATCGGTGGCAGGTAACTCTAGCTCTTCAAATGTTTCTCAATCTCATTTAACTAAAGCCAAATTTGGAGTGAAAGTATCTCCTGCTGAATCAGTTTCATCGTCGCCGATGAGGACATCCTGCCTCGATCAATTTCGAGGAGAAAAAGAGGAGATTACCTCTAATATTCATACCGACTCTCGTAATGTTACACCGGCATTTGACGTTGGGGTTAAGGATACTGCTCTCGACACAAACAGCAAGAAAATTAAAGCTTCTTCTGCTGTTCAACGCCATTGCGTTACTGCTGATGTTAATGCTGTTAAGGATCCTAGGTTGTGCAAGCCCAGCAACAAGAAACGCAAGAAAGAGAACATACATATTGCTGGTGAAGGACTGGAAGCCCCTCAAAAACTCAAGGGTCACGACGCCGAAGACCAGAAATCAGGTGCTTTACTTCAATCAAATAAAGTAGTTAAACTTCAGACAAAGCTAAGTCGGGATTCCAAAGCGGGAAATAAAGGTGGTCCGAGAACAGTAGAAATAAGGGATGGAAAATCAAAATGCTCCTCTTCTGGAGGTGAATGCAAAGAACTATCACGTCTCGGTGGCGATCCTTTACGAGTTTCTATTAGAGCAGGAGATTCTCATCAGCTTATAACCGATGCTTCTAAAAGTGGTGACGCGGTCGAGTTGAAGACGATAAAGAATGAACTTAACCACGGATATCAAAAACCCGATCTGCCAGGATCTAGAGATGTTAATGCTTCAAATCTCAACAGAACGAAATCCTCGAATCAGACTGCTTGTAATACATTGAAAGAAGCCAAAAAACTCAGAGACAGTGCAGATCACTTCAAGAGTTCTGGATTCACTTTTGAAAGCAATGAGCTTTACTTTCAATCTGCTCTGAAGTATCTTCATGGAGCATTCCTTCTAGAGACACTTAATAATACGAGTGGCAAGCCTGGTGATGTTTCCCCCATGCAGTTCTATGGCATTACAGCTGAATTGTGCGAGATCTGTGCTCTTGAATATGAACGTCGCCAAGAAATGGCTGCAGCTGCTTTGGCTTTTAAATGTATCGAAGTAGCTTATTTGAGGATCGTTTACCATAGACATTCAAGTGTCGATGGAGATCGCCTCGAGATGCACTCGTTGTTCCGTACAATTGTTCAAGGCGAATCTCCGTCTTCTTCTATATCCGATGTCGATAACTTAAGTAATCAAGGAGCTATGGATAAGGTGACTTTTGACAAGGGCAGTTCCCGAGGTGTGGGTAGTCACATCTGGAATGCTGCAAACTGCGCGAGTTTTGCTCGGGTCCTCGACTTTGCGCGGGATATGAATTCAGCTATGGAGGCATCGAGAAAATCTCGAAACGCGTTTGTGGCAGCTACTACTACGAGGTCATGTGGGAGCGAAGGAAAACATGTGGACTATGTTGTTGAATCTGTTAAAAAGGTGATTGATTTCAGCTTCCAAGAAGTGGAGGAGCTCGTGCAGTTGGTTCGAGTCGCTACGCAGATAATAACCCGCTCGGGTTTTCGCAGTGGTAGAGAGTAG 4101 43.55 MDSASLKKGFCSVFGKMIIGTRVLGSHLMVGSVEPMIIGDCIDMEEGEASCYHKENGGDIDPDIALSYIDEKIERFLGHFQKDFEGGVSAEKLGAKYGGYGSFLPMYERAPSILPHNINQQSDCNAIAPTPVNVPLENPKAPLPKRSGAIVCNAISSHNKGTTSGRVDSFLPATRVTNSYPSKDEATGRLGSPMSNRSLKFRLKVGSDSTALKNAAIYSGLGLDDSPLSSSENSSDVSEGMLPISQSSPDESPTKIIQAMTSLPVPHGALISPLHDSLLGLSRREKPLRETKPVFSLEDKKDGLAKLASGTILKQNDSTLVKKKKKEMGHKERQVNPKNEVYASRCEEKTALTLVNGKSENEAFVSKDLLSNELQCKPGSEVTKSNAYLDPQKKKLSRKPTLHETDKDKASIKKEKPGIVGEKNSKVIQTAGGKIAGSFEEGFKNRSEAFKGRKDTDSDTPESENRKHRLKLHSNEKVGTNNGDSFNRMGLDENRKSKDVIERASGDLQRLDGLYDSGIKSSKSLKVAEPAAGVAPVDEWVCCDICQKWRLLPFGTKPDQLPDKWLCSMLNWLPGMNRCDISEQETTEKLYALYQLPLPESGNALQSHGNGLIAGDTSNEGKRKEIQNPVSRNGPTLAKSSLKDPLQESRKKGSLYGSNNVPNQLKNSTDRSSSDLHNSVEGKNRGKLKEKSTEKANCDVLKRKNKKPEGVRSVDSHQDFNMELGKLGCSSNSGLTNMEGGEGMLKKPNKSNTENKMQISLKKRGETAEITKKRKAKDWQDDQNSHNSALLHEPVRSKEESCERSKKKKRFDRVEEISHDKDNEPKMQNKKNFAKQTSVGKELLKRSLVARQVSVAGNSSSSNVSQSHLTKAKFGVKVSPAESVSSSPMRTSCLDQFRGEKEEITSNIHTDSRNVTPAFDVGVKDTALDTNSKKIKASSAVQRHCVTADVNAVKDPRLCKPSNKKRKKENIHIAGEGLEAPQKLKGHDAEDQKSGALLQSNKVVKLQTKLSRDSKAGNKGGPRTVEIRDGKSKCSSSGGECKELSRLGGDPLRVSIRAGDSHQLITDASKSGDAVELKTIKNELNHGYQKPDLPGSRDVNASNLNRTKSSNQTACNTLKEAKKLRDSADHFKSSGFTFESNELYFQSALKYLHGAFLLETLNNTSGKPGDVSPMQFYGITAELCEICALEYERRQEMAAAALAFKCIEVAYLRIVYHRHSSVDGDRLEMHSLFRTIVQGESPSSSISDVDNLSNQGAMDKVTFDKGSSRGVGSHIWNAANCASFARVLDFARDMNSAMEASRKSRNAFVAATTTRSCGSEGKHVDYVVESVKKVIDFSFQEVEELVQLVRVATQIITRSGFRSGRE 1366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1687631 1694084 + CmaCh17G003140.1 Cma17g00314 312209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00314 1366 MobiDBLite consensus disorder prediction 765 816 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 792 816 - -
Cma17g00314 1366 ProSiteProfiles Zinc finger CW-type profile. 534 587 IPR011124 GO:0008270
Cma17g00314 1366 MobiDBLite consensus disorder prediction 380 425 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 223 252 - -
Cma17g00314 1366 Pfam CW-type Zinc Finger 539 585 IPR011124 GO:0008270
Cma17g00314 1366 PANTHER CW-TYPE ZINC FINGER 39 382 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 1086 1112 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 629 643 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 765 782 - -
Cma17g00314 1366 Gene3D - 526 589 - -
Cma17g00314 1366 PANTHER CW-TYPE ZINC-FINGER PROTEIN 384 1360 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 391 421 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 959 997 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 676 694 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 652 675 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 1011 1032 - -
Cma17g00314 1366 PANTHER CW-TYPE ZINC-FINGER PROTEIN 39 382 - -
Cma17g00314 1366 PANTHER CW-TYPE ZINC FINGER 384 1360 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 446 469 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 1096 1112 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 605 694 - -
Cma17g00314 1366 MobiDBLite consensus disorder prediction 224 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00314 - - - bhj:120067193 1872.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01217 Cma17g00314 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00402 Cma-Chr8:2303754 Cma17g00314 Cma-Chr17:1687631 2.95E-28 dispersed
Cma17g00314 Cma-Chr17:1687631 Cma17g01116 Cma-Chr17:7812656 2.39E-25 dispersed
Cma17g00314 Cma-Chr17:1687631 Cma08g01217 Cma-Chr8:7457386 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00314 Cma_Chr17 FPKM 4.455755 5.485449 4.355055 5.3855 3.073829 2.855491 3.509673 8.329062 7.006133 7.810584