Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00326 ATGGGCCTCAGGCCCATCATAGGAAGCAAGCACAAGCAACCCTTGCGCCATTACTTACCAGAAACTCAAACCTCGTTTCACAAGCTTCCTTCCCCGCTGGTTATGGCGGGTACGTGCGGTTCCGCTGTTTCTTTCTCCATTCATTGCAACAAATTCACCATTTGCAGCACCAAGCCATTGCTTTCAGTTTCAGCTTCCATTTCCATTTCATCTCGTTCAAGGCTTACAAGAAGAAAAAATCACTTGCGAATCAAAATCCTCAAAACCCTAACTAAACCTCCTCCGTTCACTGTCTCTCCCATTCCTCCGCAAATCGACTCTGAAACTCCGATCGTATTGCCGGAAATCTCAGGTTCTGCGGGCGTCGAGACCGAGGTGTTATCTCCGGTGGAATGTTGCCCTTCCTCCACTACCACGGACGGTGAATCTCGACTCTCCGAGAGCTCGGACACTGCCTCGTTGCTTAATTTTGACGTTGCCAACTTTTCTTTGGGAAGTTTCGTCAGGTTTGGCGTTTACTTGCTTGCTCTTTTTGCGTTTCAGACAATCTGTACTGTGTGGGTTTTAGATTATGGTAATTCAATTAAGGAAGATAAGAACTCAGATAAAGATTTGAGTATTAGAAGCAAAAGCGGAAAAGAAGTGTTGTTGAATGGAAATGAGAGAATCGTTCTTGGAAATTTCGGGTCTAAAACGAACGAGTTGGTTTATTTAGACGAATCGAAGATGAGAGACAAAATTGAAGAGATCAGGTTGTTGGCTAGGAAAGCAAGGAAAGAGGAGAAATATCAAAAACCTGATGATGTAGGGGAGGGCGACACGGAGGGTAGCAATGTAATTTCAAGGGCTAGGATTGGTATTGATAAAGAGATTGATGCTCGACTTGTTAGGTTACAGAAGAGGCTAAATTCTAACAAAGAAAGGATACCGGATTCACCAGTAAATTTTTTGTTCAAGTCTGAGAATGTTGAGGAAGCTGCTAAAAGGAACGATTTCAATGATGAAGAAGAACGGAATAAGAGTCTAATATATAAGAAAAAGTTGCAATTCAGAAACTCTAATGGAGATAGAATGAAGAAGCCTATGGGGTTTCAAGGATTTGTTTCTAATGGTAAAAAAAGTGGCTCAAATGGCAAGGCTATTAACAAGGGAGTGAAGGATGCTGAAAAGCGAGTAGCTAACGAAATCAAGTATAACGATCCCAAGATGTCCAAAGACGATAGCACAAATTTGGGCAGCGATAAGTCTGTATTGGTACAGAAAAACGATGGAACCAATTTGGATTTCGATATGAAGGTTTCGAGTTCAAAGAAGAAATCAAGTAATGGTGCCGTTCAGGAGACTTCTTCAGTGGAGATCTCGAAGTCACCGGATTTAAAAGATGTAATGGAGAAAAGATCTCCTTCGAGGGCTGATTTATGGTGGATGAATCTTCCTTATGTTCTAGTTATTTTTATGCATCGAGGTTCTGAAGATGAAGAACATGGAGGACTTTTCACCTTAAGGATTCCTTCCAAGACACGGGATATTGAGGAATATACTACATATACAGTTGCTTTTGAACACCATGTTGATGCAAATAACTTCTGTTATCTTCTGGAATCATTTTTTGAAGAGCTCGACACTTTCACAACCGACGTCATTCCTCTGCCAACAAAAGAACTCGAGGTCATAAAATCACATACAAGTAAAATTATTGTTGTGAAGAAGGGGCAATTGCAGCTCTATGCTGGTCAACCGTTTTCCGATGTCGAGATGGCTTTTGTCACGGACGATCTGTTGCAACAAATGCAGCCATGGAATCGTACCGAAGATGGGGAAAATTTGCAACAGAAGATGGAGTTGTTGCAGATATGGATTGTAGGCGTTTCGTTTCAATCTCCGTGTCTACTAATGGGCGCCCGAACCAACAACCGTAAGCGCGACGACGAGTGTTTGAGCCTTAATCGTTCGTATTCATCTTTGAAATCACCGGATTTTCACGTCTCCAAGAAACCTAAAGTTTCTGCTTTGTCTTTGGATCGGCCAGTTTCCTCATCGAACTATACGGTGGCTAGGCTTTCCCGGTACCCTGAAGAAACTCCGCAATTGCGCCGAGAAGTACACGGCCCTTGCAGAATTCGCAAATTCGGGCTTTGGAAGAGCTTCTATAGGCATTGGGAGTCAAAAAATAATTGCGAGTCGTCGGAACAGTACGCGGCGGGAAATATGTTATCGTACAACTACCAGATTGCGAAGAATCGTGCAATTGGTGCATTGCGGTCTTTCCCGAAGGATTTCATTAACTTGGATTCAGACTCCGAAACCGAAAGAGGCGCTTCTGGAGATTCGAAGAACGAAGACAACATCGAGGCAATTGAAGATGATAAACCGGACCAGAGGCCTTGTGAGGTTAATACAATGCAGGAATTGGATGCGAAGATGAAGAATGTTCATCAGCCGTCGACTTCGGTAGTTGTAGATTTGACAAATGCTGATTCGAAGGTCGAAAATGCTGAGGCGATGCTTGGTGCTTTGTCACTGGATCGAGACTTGTCCAGTGTTTCTGCTTACAAGAAGTTGCTTCAGACTGTGGAAAGGCGGACATCCAGATTGAAAAGCTTGGATTTCGAAATCGAGTTGAACGAGAAGCGCCGATCGATTCTTCAATCCCGAACTCCAAAGAAGAAGCCTCTTGATGAGATTCCACAGGAACTTTTTACTCCTCTTACAAAGGAAGAGGAGGTGCAGGTTGAACGTGCGCTCTCTACGAACCGGAGGAGAGTTTTGGTTACTCATGAGAATTCAAATATTGAGATTACTGGGGAAACTTTGCAGTGTCTGAGACCAGCTGCCTGGTTAAACGACGAGGTGATTAATTTGTATCTTGAGTTGCTGAAAGAAAGGGAAAGAAGGGAGCCAGAGAAGTATTTGAAATGCCATTTCTTTAGTACCTTCTTCTATAAAAAGTTAAATGGAAGGAATGGCTACGATTACGGATCGGTTAGAAAATGGACCAACCCAAAGAAGTTGAAGTATGAACTCATTGATTGTGATAAAATATTTGTCCCCATCCATAGAGAAATACACTGGTGCCTAGCAGTAATCAACAAAAAAGAGAAGAAGTTTCAGTATCTTGATTCTCTCAAGGGAATGGATTCTCGTGTTTTAAAGACATTGGCGAGATATTTTGTAGATGAGGTGAAGAACAAGAGTGGAAAAGATATTGATGTAAGTTCTTGGGCACAAGAATTTGTCGAAGACCTTCCCGAGCAAGAAAATGGGTTTGATTGTGGCATGTTTATGATCAAGTATGCTGATTTTTATAGCAGAGGCTTGAATCTCTGTTTCAAGCAGGAACACATGCCTTATTTCCGACGTAGAACAGCCAAGGAAATTTTGAAATTGAGAGCTAACTGA 3399 42.39 MGLRPIIGSKHKQPLRHYLPETQTSFHKLPSPLVMAGTCGSAVSFSIHCNKFTICSTKPLLSVSASISISSRSRLTRRKNHLRIKILKTLTKPPPFTVSPIPPQIDSETPIVLPEISGSAGVETEVLSPVECCPSSTTTDGESRLSESSDTASLLNFDVANFSLGSFVRFGVYLLALFAFQTICTVWVLDYGNSIKEDKNSDKDLSIRSKSGKEVLLNGNERIVLGNFGSKTNELVYLDESKMRDKIEEIRLLARKARKEEKYQKPDDVGEGDTEGSNVISRARIGIDKEIDARLVRLQKRLNSNKERIPDSPVNFLFKSENVEEAAKRNDFNDEEERNKSLIYKKKLQFRNSNGDRMKKPMGFQGFVSNGKKSGSNGKAINKGVKDAEKRVANEIKYNDPKMSKDDSTNLGSDKSVLVQKNDGTNLDFDMKVSSSKKKSSNGAVQETSSVEISKSPDLKDVMEKRSPSRADLWWMNLPYVLVIFMHRGSEDEEHGGLFTLRIPSKTRDIEEYTTYTVAFEHHVDANNFCYLLESFFEELDTFTTDVIPLPTKELEVIKSHTSKIIVVKKGQLQLYAGQPFSDVEMAFVTDDLLQQMQPWNRTEDGENLQQKMELLQIWIVGVSFQSPCLLMGARTNNRKRDDECLSLNRSYSSLKSPDFHVSKKPKVSALSLDRPVSSSNYTVARLSRYPEETPQLRREVHGPCRIRKFGLWKSFYRHWESKNNCESSEQYAAGNMLSYNYQIAKNRAIGALRSFPKDFINLDSDSETERGASGDSKNEDNIEAIEDDKPDQRPCEVNTMQELDAKMKNVHQPSTSVVVDLTNADSKVENAEAMLGALSLDRDLSSVSAYKKLLQTVERRTSRLKSLDFEIELNEKRRSILQSRTPKKKPLDEIPQELFTPLTKEEEVQVERALSTNRRRVLVTHENSNIEITGETLQCLRPAAWLNDEVINLYLELLKERERREPEKYLKCHFFSTFFYKKLNGRNGYDYGSVRKWTNPKKLKYELIDCDKIFVPIHREIHWCLAVINKKEKKFQYLDSLKGMDSRVLKTLARYFVDEVKNKSGKDIDVSSWAQEFVEDLPEQENGFDCGMFMIKYADFYSRGLNLCFKQEHMPYFRRRTAKEILKLRAN 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1767417 1777584 + CmaCh17G003260.1 Cma17g00326 312221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00326 1132 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 632 1131 - -
Cma17g00326 1132 Gene3D Adenoviral Proteinase; Chain A 900 1130 - -
Cma17g00326 1132 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 632 1131 - -
Cma17g00326 1132 ProSiteProfiles Ubiquitin-like protease family profile. 931 1102 IPR003653 GO:0006508|GO:0008234
Cma17g00326 1132 MobiDBLite consensus disorder prediction 410 455 - -
Cma17g00326 1132 MobiDBLite consensus disorder prediction 764 794 - -
Cma17g00326 1132 SUPERFAMILY Cysteine proteinases 900 1131 IPR038765 -
Cma17g00326 1132 MobiDBLite consensus disorder prediction 396 463 - -
Cma17g00326 1132 Pfam Ulp1 protease family, C-terminal catalytic domain 946 1126 IPR003653 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00326 K08592 SENP1; sentrin-specific protease 1 [EC:3.4.22.68] - csv:101210787 834.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01227 Cma17g00326 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01016 Cma-Chr6:6869771 Cma17g00326 Cma-Chr17:1767417 2.20E-10 dispersed
Cma17g00326 Cma-Chr17:1767417 Cma05g00547 Cma-Chr5:2654676 1.89E-12 dispersed
Cma17g00326 Cma-Chr17:1767417 Cma08g01227 Cma-Chr8:7521101 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g298 . . . Bda08g00290 . . . Bma05g01035 Cmo08g01202 Cmo17g00315 . . . . . . . . . . . . . . . . . . . . . Cone14ag0762 Cone15ag0771 . . . . Chy11g01509 . . . . . Bpe05g00837 . . . Sed09g0246 . . Cma08g01227 Cma17g00326 Car08g01103 Car17g00300 Cpe12g00277 . Bhi12g02057 Tan06g2678 Cmetu11g0237 . Hepe03g0102 . . . . . . . . . Lsi09g01430 . . Cme11g02011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006082 1 3 1 1 1 1 3 1 1 1 0 1 1 1 1 2 1 2 2 1 1 2 1 1 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00326 Cma_Chr17 FPKM 7.52895 9.23311 13.825989 14.104189 21.059612 17.814875 22.690445 16.886036 17.711657 17.832111