Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00330 ATGGAGGAAGCCGTTTCTCGAATCCTCACAGAGCTTGAAGAAGCTCGCTATCTCGACGGCTCTACAAATCTCCATTCTCAGCCTCCGCCGCCGCTCTCCGATTCCGCTCTCTTCGACCTTCAAAGCTTGTTGGACAACTCGATCGGTACCGATGAACAACAACCAGTCGTTCGCCTCTACGAAGACCTCTCTGCCAAATCCCTATCTCCGTCCTTCCTCATCCGCGCCATCGCCTCCGCCATGGATGAGCCTTCCCCTCGTATTTCGATCTTAGCCTCTAAAGTCTATTTGTCCCTTCTTTTGGCCCCAAATGCACCAGTTTTCACGCTGTTCAATCCGATGGATTTTCTCTCGTTTCTCAGGTCTATGAGACGATTCTTGAAGCAGCGACCACGGACTACGCCGAATCAGGACGATTCAAATCAGGAGTCCATTGCTCCCAAACGGAAGAGGAAAGGCGGTGTTAAGGGTAAGGGTTTGAGGAATTGTGCGCAGAGGCAGAGTTTTAATGGCGAACATCATGATGGTGAATGCGATGCAAGAGTCTTGTATCCTGTGCTTGAGAGGTTAGGGATACTAATGAGTTTGATTCACTTGGATCGATTCCCTGATAGTTTGAAATCTTTGGTTGAAACTGTATTTGATATTCCGGTTTTGGCACGAGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTAACCAATTTATGTTCGCGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTGGTGAGTATTGCCGCTGAGGTGATTAAGTCTCTATCGCCATTGATTCTTCATCATAAAGATCAGGCGCGAGCGTTTGCGCTGGAGTTTGTCACTATTCAAATAGCGAATGCAGCAAAGGAATCAGATGGTGTTAAAAGCGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCACCTGAGAAATCCGAGCCTCGTGCTTTAGCTGTTGATTCAATAATGGAGGTTGTTAAAGTGATGGAATTCAAGGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCCGAGGAAAGTCTAATCTTAGGCTGTTAGCTATTGATCTTATCTCAACGCTGATAATGTCCTTGAGTGATCCAGTGGCCGTTGATTCCGAAAGTGAACTGAAGGATTCGTGGAGATTTGGGTGCTTGGTGGCATTGGTCCAACGATGTTCAGATGCTGGTGCTGCAATTCGTGCCCGGGCACTATCCAACTTAGCTCACCTTGTGGTGTTCTTGTCTGACAATGACAAGAATAAGGCCTTACTGAAGGAAGTGTTGGGGTCTGGTGACAGACATTGCAAAAAGAATGGAAGTGAAATTCATGCTCTTTTGCGAAAAAGGTGTGTGGATGAGAAGGCGGCAGTTAGGAAGGCTGCGTTATTTCTGGTTACCAAGTGTACAGCCCTCCTTGGTGGATCAATGGATGGAGATATGCTGAAGACTGTTGGAATTGCTTGTTCCGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTTTCTGAGGCCTTCCGAAGATTCCCAGATGAAAGTGTCACTGTCGAGTGGCTACATTCTATTCCACGTTTGATTGCTGATAATGAATCTAGCATTCAAGAAGAGTGTGAAAACTTGTTTCAAGAACTAGTACTAGACCGGTTGTCTAGAGTTGGATCTTCAAGTTTACCCCGTGATGGATCAAGAACCCTTGATTTAAAGAGGCAATTTGAGTTGTTAATTCCTGGAGTATTGGATCTTCTTAAAGAGATAAGTCATGCAGAGGTAATGCCGTGGGTGAAGAAAGTTTGTGCTAACTTGGGAAAAAAGAAACGATTTGAAAGCACAATTGCCGTTTCACTTCAGACGATTATAAAGACATCTGAATCCTTATGGCTAAGCCAATCCTTACCACCGGAGAAGTGGACAGCTCCCCCGGGTGCCTGGTTCCTGCTGTCGGAAGTGTCTGCTTATCTTGTGAAAGCAGTTGACTGGGAGTTTCTTCATCATCACTGGAAAATCCTTGATGATCATGGTAGGGCTGAGTTTGGGAGTCCAGTGGCTCAAGTAGGTTTATTCGGAGATGAAAACAACCCAGAGTCAAATTCCATCGCTTGGGCTCAGGATCGAGTTTTTCTCTTGCAAACCATCTCTAATGTTTCTCTTGAGCTGCCTCCAGAACCTGCAGAAAAGTTGGCTCACGAATTGATTAAAAAGGTTGAAGAATTCAGCATGCATTCTACCGAGGTGAATGCGCATGTAAAAACACTTAAAACATTGTGCAAACGGAAGGCTATGCAATCTGCTGAAGCCGATGAGCATATCCTAACATGGGTAAACCAGCTGCTCTCCAAAGCCTCTCAAATATTGGAGAAGTATATATCCAAGCATAGAAAAGCAAAAAAAGATGTGAACTTCATAACACCACCTCCTAAAAGTGGTAGTAGATTGGGAAAGCGAGCAACTGCCCCGAGCAAGTCACTGTCACGAGCAATCACTGCCGCTTACACCATTGGCTCTTTGATTATCATCTGTCCATCTGCTGACATAACTACCATCATACCACTTCTCCACACCGTTATCACGTCTGGAAACCGTGATTCCAAATCGAATAAACTACCTATTCAAACGGTATCTATAAGGGAAACTGCGCCTTCTTTATACGTTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTGCTGACGAGAAGTGTGCAAAGAGCTACATTCCTCTATTTGTACAGGAGCTTGAAAATAGTGACTGCGCAGCTCTCCGCAACAACCTTGTTATCACGATGGCAGATTTTTGTGTACGCTATACTGCTCTAGTTGATTGCTACCTTACGAAGATCACGAAATGCCTTCGCGACCCTTGTGAACTTGTCAGAAGACACACATTCATACTTCTATCGAGATTACTACAGAGAGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTCGACGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTTGGGAACATTTTAAAAGTAAAGGCGCCACTTTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTCTGAATGACTGTCGTGCCCATTCTGGACATAACGATTCGAAGGCTTCGAGAGCTGAAAGCCGATTATTCTCTATTCGAGGTAATGATGAAAGTTCGAGGCGCAGGAGAATGCACATTTATGTTTCTTTGTTAAAACAAATGGCTCCCGGACATCTCCTGGCCACCTTTGCAAAGCTATGTTCAGAGATTCTTGGTGAAGCTTCAGATGGTAAACTCAGTATGGATGATACCACTGCACGGTCTGTTTTACAGGACACCTTTGATATTCTTGCTTGTAAAGAGATTCGATTATCGATAAATCGAGGGTCGTCGTCGGAATCTGGTGATGTAGATGAGGAAGGAGGCGAGAGCGGAGGGGTGTCTGCTGCTAGAGGAAAGGTCATCACTCATGTTGTGAGAAAAGGTCTCATTCAAAACTCCATTCCCATCTTCACTGAGCTAAAAAGGCTAATGGAAAGCAAGAATAGCCCTCTTATAGGTTCTCTTATGGAATGTCTTCTAGTTCTTCTCAAAGACTACAAGAACGACATCGATGACATGTTGGTAGCTGATAAGCAACTTCAGAAAGAGCTCGTCTATGACATTCAAAAGTACGAAGCTACCAAAGCTAAGTCGGCCGCGGCCGAGGCGGTCAACGAGATGCAAAAGTCAGCTAATTATCTTTCTCCTGAGGCTCCTCCTCATGTTAGAAACTCCATTAACAAGCTAACCTCCAAACTCCAAAAGGACTCAAGAGTTGCTTCAGCCATTGCTGATGTAACCGCTGCAGCCACAGCTAAGTCTGTGCTTAGAGAAGTGAATAGAGGGACTTCGACGCCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTTGTACTGGAGGAAACAATGGCGCAAATACCTCACGCTTGAATGTGATTGAATCTGTGAGGAAACGGCAGTCTTTTGATTCTGATGAAGAAAACTAA 4041 44.57 MEEAVSRILTELEEARYLDGSTNLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPVVRLYEDLSAKSLSPSFLIRAIASAMDEPSPRISILASKVYLSLLLAPNAPVFTLFNPMDFLSFLRSMRRFLKQRPRTTPNQDDSNQESIAPKRKRKGGVKGKGLRNCAQRQSFNGEHHDGECDARVLYPVLERLGILMSLIHLDRFPDSLKSLVETVFDIPVLAREVCTNLSIYSKLTNLCSRILSATLRPEHGDLVSIAAEVIKSLSPLILHHKDQARAFALEFVTIQIANAAKESDGVKSALVNLPRYLVQKAPEKSEPRALAVDSIMEVVKVMEFKDQIGFVDYVVKMTRGKSNLRLLAIDLISTLIMSLSDPVAVDSESELKDSWRFGCLVALVQRCSDAGAAIRARALSNLAHLVVFLSDNDKNKALLKEVLGSGDRHCKKNGSEIHALLRKRCVDEKAAVRKAALFLVTKCTALLGGSMDGDMLKTVGIACSDPLVSIRKAAMSALSEAFRRFPDESVTVEWLHSIPRLIADNESSIQEECENLFQELVLDRLSRVGSSSLPRDGSRTLDLKRQFELLIPGVLDLLKEISHAEVMPWVKKVCANLGKKKRFESTIAVSLQTIIKTSESLWLSQSLPPEKWTAPPGAWFLLSEVSAYLVKAVDWEFLHHHWKILDDHGRAEFGSPVAQVGLFGDENNPESNSIAWAQDRVFLLQTISNVSLELPPEPAEKLAHELIKKVEEFSMHSTEVNAHVKTLKTLCKRKAMQSAEADEHILTWVNQLLSKASQILEKYISKHRKAKKDVNFITPPPKSGSRLGKRATAPSKSLSRAITAAYTIGSLIIICPSADITTIIPLLHTVITSGNRDSKSNKLPIQTVSIRETAPSLYVQAWLTMGKICLADEKCAKSYIPLFVQELENSDCAALRNNLVITMADFCVRYTALVDCYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHNDSKASRAESRLFSIRGNDESSRRRRMHIYVSLLKQMAPGHLLATFAKLCSEILGEASDGKLSMDDTTARSVLQDTFDILACKEIRLSINRGSSSESGDVDEEGGESGGVSAARGKVITHVVRKGLIQNSIPIFTELKRLMESKNSPLIGSLMECLLVLLKDYKNDIDDMLVADKQLQKELVYDIQKYEATKAKSAAAEAVNEMQKSANYLSPEAPPHVRNSINKLTSKLQKDSRVASAIADVTAAATAKSVLREVNRGTSTPPLGSLSLPKLKSCTGGNNGANTSRLNVIESVRKRQSFDSDEEN 1346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1798634 1805866 - CmaCh17G003300.1 Cma17g00330 312225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00330 1346 MobiDBLite consensus disorder prediction 129 159 - -
Cma17g00330 1346 Pfam non-SMC mitotic condensation complex subunit 1 925 1102 IPR032682 -
Cma17g00330 1346 PANTHER CONDENSIN 3 1333 IPR026971 GO:0007076
Cma17g00330 1346 Coils Coil 1200 1220 - -
Cma17g00330 1346 MobiDBLite consensus disorder prediction 1297 1330 - -
Cma17g00330 1346 MobiDBLite consensus disorder prediction 1131 1151 - -
Cma17g00330 1346 SUPERFAMILY ARM repeat 339 1205 IPR016024 -
Cma17g00330 1346 Gene3D - 258 555 IPR011989 -
Cma17g00330 1346 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 3 1333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00330 K11491 NCAPD3; condensin-2 complex subunit D3 - csv:116405799 1879.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00518 Cma-Chr14:2572237 Cma17g00330 Cma-Chr17:1798634 1.14E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00330 Cma_Chr17 FPKM 2.148329 2.741882 0.427282 0.299994 10.011274 10.932285 10.706091 0.0 0.0 0.0