Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00331 ATGAATTCTGAGTTGTTTCGAAGAAATCAATCGAATCCGACGCTACAAACTCATAATTCCGTGATTGGTCCACCGAGGACTCCGGCAGGTTGTTCAATCAAATTCAGGAGTCCGATCCGTTACATGCTTCGCGAGCAGCGTCTTCTATTCGTTTTCATCGGCGTTGCCATTGCAACTCTGTTGTTTAACGTTGTCCGTTTGACTTTTCCGTTGGAGCTTCGTGATGATCAACGGTATCAAGCGGCGTTGAATGCTTTCGTTCGATTGGATTCGTCGATCCCGATGCGGAGAGTTCTGTACGAAACTCACCGTGAAGGATCGCTAGGGCGGGTGAATATGGCGGGTAAAGTCCCGCCGGGATTGAAGAAGAGGATCCTGAGGATCGTAGTTACCGGCGGCGCTGGATTCGTTGGAAGCCATCTCGTGGACCGTCTGATGGAGAGGGGCGATAACGTGATTGTCGTTGATAACTTCTTCACCGGGCGGAAGGATAATCTGGTTCATCATTTCGGAAACCCGAGATTCGAACTGATCCGACACGACGTTGTCGAGCCGATTCTATTGGAAGTTGATCAGATCTTCCATTTAGCTTGCCCTGCTTCTCCTGTTCATTACAAATTCAATCCCGTCAAGACAATCAAGACCAATGTCGTCGGCACATTGAACATGCTAGGGCTTGCGAAGAGAGTTGGCGCTCGCTTTTTGCTGACCAGCACCAGCGAAGTCTACGGCGATCCTCTCCAACACCCGCAGGCTGAAACCTACTGGGGCAACGTCAACCCCATCGGTGTTCGGAGCTGCTACGATGAAGGAAAACGCACGGCGGAGACTCTGACAATGGATTACCACAGAGGCCTTGGCATTGAGGTCCGGATTGCTCGGATATTCAACACTTATGGACCACGGATGTGCATCGATGACGGACGAGTTGTGAGCAATTTTGTAGCACAGGCATTGAGAAAGGAGCCGTTGACAGTTTATGGAGATGGCAAGCAGACCCGGAGCTTTCAATACGTTTCTGATCTTGTGGAGGGTTTAATGAAACTCATGGAAGGTGAGCACGTGGGCCCTTTCAATCTCGGCAACCCCGGCGAATTCACTATGCTTGAACTTGCTCAGGTAGTGCAAGAGACAATAGATCCAAATGCAAGGATAGAGTTCAGGCCGAACACAGAAGACGACCCACACAAGAGGAAGCCCGACATTTCCAAAGCTAAGGAGCTTCTTGGTTGGGAGCCCTCTGTGTCCCTTCGTAAAGGCCTTCCCCTTATGGTTTCCGACTTCCGTCAGCGCATCTTCGGCGACCTCAAAGACGACGCCTCCTCCTCCTCCTCCGCTGCCGCCGCCACCCTCTCCACCCTCTCCACCACCTCCTCCGTCTAG 1383 51.63 MNSELFRRNQSNPTLQTHNSVIGPPRTPAGCSIKFRSPIRYMLREQRLLFVFIGVAIATLLFNVVRLTFPLELRDDQRYQAALNAFVRLDSSIPMRRVLYETHREGSLGRVNMAGKVPPGLKKRILRIVVTGGAGFVGSHLVDRLMERGDNVIVVDNFFTGRKDNLVHHFGNPRFELIRHDVVEPILLEVDQIFHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDISKAKELLGWEPSVSLRKGLPLMVSDFRQRIFGDLKDDASSSSSAAAATLSTLSTTSSV 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1807686 1811620 - CmaCh17G003310.1 Cma17g00331 312226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00331 460 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 127 433 IPR036291 -
Cma17g00331 460 MobiDBLite consensus disorder prediction 437 460 - -
Cma17g00331 460 MobiDBLite consensus disorder prediction 1 25 - -
Cma17g00331 460 Pfam GDP-mannose 4,6 dehydratase 130 422 IPR016040 -
Cma17g00331 460 Gene3D - 248 433 - -
Cma17g00331 460 Gene3D - 123 247 - -
Cma17g00331 460 CDD UGD_SDR_e 127 429 - -
Cma17g00331 460 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 1 446 - -
Cma17g00331 460 MobiDBLite consensus disorder prediction 1 23 - -
Cma17g00331 460 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 446 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00331 K08678 UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35] - csv:101222435 791.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00309 Cma-Chr1:1486282 Cma17g00331 Cma-Chr17:1807686 0 dispersed
Cma04g00751 Cma-Chr4:3832490 Cma17g00331 Cma-Chr17:1807686 1.74E-13 dispersed
Cma04g02630 Cma-Chr4:17958543 Cma17g00331 Cma-Chr17:1807686 2.86E-173 dispersed
Cma05g01198 Cma-Chr5:9260423 Cma17g00331 Cma-Chr17:1807686 2.62E-29 dispersed
Cma12g01120 Cma-Chr12:8858280 Cma17g00331 Cma-Chr17:1807686 3.32E-30 dispersed
Cma15g00403 Cma-Chr15:1799914 Cma17g00331 Cma-Chr17:1807686 7.02E-171 dispersed
Cma16g00428 Cma-Chr16:2136204 Cma17g00331 Cma-Chr17:1807686 6.53E-27 dispersed
Cma16g00611 Cma-Chr16:3174427 Cma17g00331 Cma-Chr17:1807686 3.98E-14 dispersed
Cma14g00901 Cma-Chr14:4678072 Cma17g00331 Cma-Chr17:1807686 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00331 Cma_Chr17 FPKM 0.796175 1.409364 1.02871 1.137482 0.791619 0.728158 0.617092 24.919827 22.37023 21.561489