Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00336 ATGGAATGGTCTAACTCAAATGATGAAGTAATTCCAAATTTCTTGAAACGAAAAAGTTGCAGAGATTGCAAAAAGGTTCCCTTCTTGCTACCGAATCGGCACAGAAGATCAGAGAAGAAGAAGAAGAAGCTGAAAATGAGTAACGATGCTAAGAGAAGCATTCAAGGGAATCTTATGGTGAAATCTGTGTCGGAGGATCGGAAACCGCTGGTCATGGCGACGACTGGCAAGAAAATCGTTATAAAGAGTGCCGATATGTTTGGTGATGTACAGAAGGAGGCCATCGATGTTGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCAGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCACTGCATTGTTGGCCGTAATTTTGGTTCATATGTGACCCACGAGACAAACCACTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTATTCAAATCTGGCTGA 489 41.92 MEWSNSNDEVIPNFLKRKSCRDCKKVPFLLPNRHRRSEKKKKKLKMSNDAKRSIQGNLMVKSVSEDRKPLVMATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1836590 1839989 + CmaCh17G003360.1 Cma17g00336 312231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00336 162 PANTHER DYNEIN LIGHT CHAIN 67 162 IPR001372 GO:0007017|GO:0030286
Cma17g00336 162 SMART Dynein_light_2 74 161 IPR001372 GO:0007017|GO:0030286
Cma17g00336 162 SUPERFAMILY DLC 77 162 IPR037177 GO:0007017|GO:0030286
Cma17g00336 162 PANTHER DYNEIN LIGHT CHAIN 67 162 - -
Cma17g00336 162 Pfam Dynein light chain type 1 78 161 IPR001372 GO:0007017|GO:0030286
Cma17g00336 162 ProSitePatterns Dynein light chain type 1 signature. 128 142 IPR019763 GO:0005875|GO:0007017
Cma17g00336 162 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 75 162 IPR037177 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00336 K10418 DYNLL; dynein light chain LC8-type - csv:101220788 222.246
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01614 Cma17g00336 CCT
Cma08g01233 Cma17g00336 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00336 Cma-Chr17:1836590 Cma05g01304 Cma-Chr5:9897902 2.73E-20 dispersed
Cma14g01614 Cma-Chr14:12116188 Cma17g00336 Cma-Chr17:1836590 1.04E-63 wgd
Cma17g00336 Cma-Chr17:1836590 Cma06g01511 Cma-Chr6:9567151 3.81E-47 wgd
Cma17g00336 Cma-Chr17:1836590 Cma08g01233 Cma-Chr8:7567217 2.11E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g167 . . . . . . . . . . . Cma14g01614 . Car14g01433 . Cpe08g00175 Cpe03g01355 . . . . . . . Cla06g00469 Cam06g0503 Cec06g0505 Cco06g0506 Clacu06g0487 Cmu06g0489 Cre06g1261 Cone14ag0752 Cone15ag0760 Cone7ag0138 Cone4ag0142 . Csa06g01796 Chy11g01522 . . . . Bda13g00192 . . Bma02g00905 . Sed02g1173 . Cmo14g01651 Cma08g01233 Cma17g00336 . Car17g00309 Cpe12g00285 Cpe17g00032 Bhi12g02041 Tan06g2692 Cmetu06g1266 . . . Lcy12g0743 . . . . . . . Lsi09g01442 Csa03g01481 . Cme11g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001882 1 2 2 1 0 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 0 2 2 2 4 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00336 Cma_Chr17 FPKM 19.856491 21.918062 13.463035 13.352697 37.155884 39.922806 37.66711 12.155134 15.222889 12.120519