Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00341 ATGTCCAACGGATTTGATGCCGAAGGCGACAAAAAGAAGAAGAAAATCGCCGTCATTAGCGTTTCTTCTTTAATCCTCGTCGCTATGGTGGTTGCCGTCACTGTCGGCGTCAACAACGCTCCTCACGAGGATCTCGACGACGGCGGCGGAGGCGGCGACCTTCATGATCACGGTGACGACGGCGGCGACGTTCATGATCACGGTGACTACGGCGGCGGAGGCGGCGACGCTCATGATCACGGTGACGACGGCGAGAAGATTTCGTCATCAACTAAAGCAATCAAAACCATTTGTCAACCAACGGATTACAAAGAAACTTGCGAAGAGAGTTTAATGGTGGAAGCCGGCAACACAACCGACCTGAAAGAACTTGTCAAAGCCGGGTTCAAAATCGCCGTGGAAAAACTTAACGCGGCGATTAGAAATTCCACTACGCTTCAAGAATTAGCTAAAGACCCAAGAGCCAACCAAGCTCTTCAAAATTGCCGCGAGTTATTGGAATACGCCATCGACGATCTCCACGATTCTTACCATAGAATCGGCACCTTCCACGTGTCGAAATTTGAGGAGTTTGTTAACGATTTAAAGATTTGGCTTAGTGCAGCTCTCACTTATGAACAAACTTGTCTTGACGGATTTGAAAACACTACCGGCGATTCCGGAGAGAGAATGAAAGAGTTTTTGAAGTCCGCTCAAGAAATGACTACTAACGGCCTTGGAATTGTCAGTGAATTGTCGAACATTTTGGGTACACTTCACGAGCCGGCAGCGACTGGGCGGCGACTTTTGGACACTGACATGCCGTTGTGGGTTAGCGACGGAAAGCGGCGGCTAATGCAATTGGAGACAGGGGCGATCAAGCCCGACCTGGTGGTGGCTCAAGATGGGAGCGGAAAGTACAAGACAATAAATGAAGCTTTGGTCGATGTCCCAATGAAGAGTAATAAAACGTTTGTGATATATGTCAAAGCGGGAATTTACAAGGAAATTGTTGTTATTCCTAAGCATATGACTCATTTGACCATGTACGGTGACGGACCGACCAAATCTGTGGTTACCGGTAATTTAAATTTTGTCGACGGCATTCAAACTTTCAAGACAGCTACATTCGCTGCTATTGGAGCTAATTTCTTCGTTCGAGACATGGGGTTCGTGAACAGCGCTGGACCGACGAAGCACCAAGCCGTAGCCCTACGTATCCAATCGGATCGAGCCATCATTTACAATTGTCAAATAGATGGGTTCCAAGACACTCTCTACGCCCATGCTAACCGTCAGTTCTATCGAGATTGCACAATCAGTGGCACCATTGATTTCGTGTTTGGCAACTCTGCAGCTATCTTCCAGAACTGCAAGCTAGTGGTTCGTAAGCCATTGGATAATCAGCAATGCATTGTCACGGCTCACGGGCGGCTCAATCGTCGTGAACCGACGGCCTTGATCTTCCAAGGCTGCCACTTCATGGGCGACCCGGCTTACTTGCCGTTCAAGAAAGTGAACAAGGCGTATTTGGGGCGGCCATGGAAGCAATATTCACGAACCATTATAATGGGATCTCAAATCGACGATTTGATCCAACCCGAAGGATGGTTGCCGTGGATGGGCGATTTTGGACTCAATACGTTGTTCTACGCCGAGGTACAGAACAGAGGGCCAGGGGCTGATCAGAGCCACAGAGTAAAGTGGCGAGGAATTAGACATATTACGCCGCAGCACGCCGCGTCTTACACTGCCAGACGATTTATTGACGGCGATGCTTGGATTCCAGTCAGAGGGGTCCCCTACTCTTCTGGAATGATGTAA 1803 48.86 MSNGFDAEGDKKKKKIAVISVSSLILVAMVVAVTVGVNNAPHEDLDDGGGGGDLHDHGDDGGDVHDHGDYGGGGGDAHDHGDDGEKISSSTKAIKTICQPTDYKETCEESLMVEAGNTTDLKELVKAGFKIAVEKLNAAIRNSTTLQELAKDPRANQALQNCRELLEYAIDDLHDSYHRIGTFHVSKFEEFVNDLKIWLSAALTYEQTCLDGFENTTGDSGERMKEFLKSAQEMTTNGLGIVSELSNILGTLHEPAATGRRLLDTDMPLWVSDGKRRLMQLETGAIKPDLVVAQDGSGKYKTINEALVDVPMKSNKTFVIYVKAGIYKEIVVIPKHMTHLTMYGDGPTKSVVTGNLNFVDGIQTFKTATFAAIGANFFVRDMGFVNSAGPTKHQAVALRIQSDRAIIYNCQIDGFQDTLYAHANRQFYRDCTISGTIDFVFGNSAAIFQNCKLVVRKPLDNQQCIVTAHGRLNRREPTALIFQGCHFMGDPAYLPFKKVNKAYLGRPWKQYSRTIIMGSQIDDLIQPEGWLPWMGDFGLNTLFYAEVQNRGPGADQSHRVKWRGIRHITPQHAASYTARRFIDGDAWIPVRGVPYSSGMM 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1855462 1857484 - CmaCh17G003410.1 Cma17g00341 312236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00341 600 Pfam Plant invertase/pectin methylesterase inhibitor 93 240 IPR006501 GO:0004857
Cma17g00341 600 PANTHER PECTINESTERASE 83 599 - -
Cma17g00341 600 Gene3D - 283 599 IPR012334 -
Cma17g00341 600 ProSitePatterns Pectinesterase signature 2. 433 442 IPR033131 -
Cma17g00341 600 CDD PMEI-like_3 96 247 - -
Cma17g00341 600 ProSitePatterns Pectinesterase signature 1. 314 333 IPR018040 -
Cma17g00341 600 Pfam Pectinesterase 289 585 IPR000070 GO:0030599|GO:0042545
Cma17g00341 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 92 246 IPR035513 -
Cma17g00341 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 88 247 IPR035513 -
Cma17g00341 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 90 244 IPR006501 GO:0004857
Cma17g00341 600 SMART PMEI_2 89 241 IPR006501 GO:0004857
Cma17g00341 600 PANTHER PECTINESTERASE 83 599 - -
Cma17g00341 600 MobiDBLite consensus disorder prediction 46 87 - -
Cma17g00341 600 MobiDBLite consensus disorder prediction 43 87 - -
Cma17g00341 600 SUPERFAMILY Pectin lyase-like 285 598 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00341 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101221958 920.998
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01533 Cma17g00341 CCT
Cma06g01518 Cma17g00341 CCT
Cma08g01239 Cma17g00341 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01192 Cma-Chr11:7073950 Cma17g00341 Cma-Chr17:1855462 0 dispersed
Cma17g00341 Cma-Chr17:1855462 Cma06g01518 Cma-Chr6:9594721 0 dispersed
Cma17g00341 Cma-Chr17:1855462 Cma06g01529 Cma-Chr6:9634771 0 wgd
Cma17g00341 Cma-Chr17:1855462 Cma08g01239 Cma-Chr8:7592616 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g153 Blo01g00064 . . Bda08g00298 . . . . Cmo08g01213 Cmo17g00328 Cma06g01518 . . Car14g01429 . Cpe08g00172 Cpe03g01352 . . . . . . . Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 . Csa06g01790 Chy11g01528 . . . . . Bpe05g00827 . . . Sed02g0010 . Cmo14g01648 Cma08g01239 Cma17g00341 . . . . Bhi12g02036 Tan06g2699 Cmetu02g1549 . Hepe03g0084 . Lcy12g0754 Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
Vvi5g259 . . . . . . . . Cmo08g01213 Cmo17g00328 Cma06g01533 . . . Sed02g1163 . . Bhi01g01041 Tan10g1033 Cmetu06g0197 Lac11g0857 Hepe05g1419 . Lcy11g1391 Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 Lsi05g01558 . Chy11g01528 Cme06g00752 . . . . Bpe05g00827 . . . . Cmo06g01513 . Cma08g01239 Cma17g00341 . . . . . . . . . . . Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000192 6 4 7 5 3 4 2 4 4 4 4 4 18 4 4 18 4 8 1 4 4 5 16 7 9 3 8 10 5 3 182
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00341 Cma_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.109884 0.218134 0.194317