Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00344 ATGGCCGCCCGGCGAGCATTTTTCACTGTCCTTAGCCGAAGCTTCTCCTCTTCTTCTTCCTTGTCTCATCCGTCTTCTATTTCTTCTCGCCTGAGACTCGCTTTTCCTCTGCTCGACAGACAGAGTCAAATAATCCCTAATTCATTCAATTTTCCAGTTCGATTCAGGACTTCGGGGTCCGGATACTCTCCACTCAATGATCCTTCTCCTAATTGGAGCAATCGACCTCCTAAAGAGACGATACTCCTCGATGGCTGTGATTACGAGCATTGGCTGATCGTGATGGAGTTTCCAAATGATCCGAAACCATCGGAGGAGGAGATGGTGAACTCTTATGTCAAAACTCTAGCCGCTGTTGTGGGAAGTGAAGAAGAGGCGAAGAAGAAAATTTACTCTGTCAGTACAACTACGTATACTGGCTTTGGTGCCTTGATTTCGGAAGAGCTTTCTTACAAAGTGAAAGAATTGCCAGGAGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTATGGAGGTGATCTGTTCATTGACGGAAAGGTCTACCCAAGACCGCAGTATAGGTACACTGAGAGGCAACAATCTGGAAGAGTTAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGCCAACCGATTCAGAGACAAAGCTGGGGTCAAGACCAGAGAGATCCAGTGCAGCAACCACCACCATCCATGGACGGTCAAAATACAGCTCGAAGTGGTGTCGGAGATTTCTCGACAAACCCAGGCGAGTTTAATCGGGGCAATCACTGA 807 47.09 MAARRAFFTVLSRSFSSSSSLSHPSSISSRLRLAFPLLDRQSQIIPNSFNFPVRFRTSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKPSEEEMVNSYVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFIDGKVYPRPQYRYTERQQSGRVRPRPRYDRRRETMQVERSQPIQRQSWGQDQRDPVQQPPPSMDGQNTARSGVGDFSTNPGEFNRGNH 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1866218 1867974 + CmaCh17G003440.1 Cma17g00344 312239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00344 268 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 84 170 IPR037045 -
Cma17g00344 268 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 3, MITOCHONDRIAL 46 219 - -
Cma17g00344 268 MobiDBLite consensus disorder prediction 190 268 - -
Cma17g00344 268 MobiDBLite consensus disorder prediction 219 268 - -
Cma17g00344 268 MobiDBLite consensus disorder prediction 198 218 - -
Cma17g00344 268 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 46 219 IPR039206 GO:0016554
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00344 - - - cpep:111806991 496.123
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01241 Cma17g00344 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01168 Cma-Chr1:8500428 Cma17g00344 Cma-Chr17:1866218 3.22E-49 dispersed
Cma04g00570 Cma-Chr4:2902890 Cma17g00344 Cma-Chr17:1866218 1.90E-56 dispersed
Cma09g00911 Cma-Chr9:4542115 Cma17g00344 Cma-Chr17:1866218 4.34E-50 dispersed
Cma16g00423 Cma-Chr16:2113554 Cma17g00344 Cma-Chr17:1866218 3.09E-58 dispersed
Cma17g00344 Cma-Chr17:1866218 Cma04g01851 Cma-Chr4:9330548 6.89E-42 dispersed
Cma17g00344 Cma-Chr17:1866218 Cma08g01241 Cma-Chr8:7597484 1.24E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g148 Blo01g00063 Blo12g00141 . . . . . Bma05g01026 . Cmo17g00331 . . . . . . . . . . . . . . Cla06g00461 Cam06g0492 Cec06g0495 Cco06g0494 Clacu06g0478 Cmu06g0479 Cre06g1252 . . Cone7ag0130 Cone4ag0135 . Csa06g01786 Chy11g01532 . . . . . Bpe05g00826 . . . Sed02g1424 . . Cma08g01241 Cma17g00344 . Car17g00313 Cpe12g00292 . Bhi12g02035 Tan06g2704 Cmetu06g1492 . . . Lcy12g0760 . . . . . . . Lsi09g01453 . . Cme11g02035
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005631 0 1 1 1 1 1 1 1 1 2 1 1 2 2 2 1 1 2 1 1 2 1 1 1 1 2 2 1 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00344 Cma_Chr17 FPKM 16.358091 21.215364 21.398514 19.230652 34.076027 36.818901 38.461052 29.761236 29.769163 29.318783