Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00346 ATGGCGGACTGGCGGACGGATTCACTCCACGACCCTGGTAATGATCCGCCGTACCCAATCTCGTGGGCCTTCAGGAAAACAAAGAAAAAAACCTTCAACGAGAACAAATTTCGATCTCTCGATTCCTCTGTTTCTGTTTTCCGTGGATTAAGAGTGTTCAATCGTGGCTGTGTTCGATCAAACGAAGCTGCTGTAGCGTTGGACAGATTAGGAATGGGATCGGAGCAGTTGGTGGATGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTACGGCTACGATGTCGTCGTTCTTCTCGTTTCATCACGACGCTCCTGAGCCGACTAGGATTTTCGATGAGTTGCCAAATGCCACAATCATTTCCGTTTCTCGCCCTGATGCCGGCGATATTAGTCCCATGCTTCTGTCTTACACAATCGAGTGCCAGTACAAGCAGTTCAAATGGCGCATGTTGAAGAAAGCTTCCCATGTATTTTATTTGCATTTTGCATTAAAGAAACGGGCGTTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATCGGAGATCACACTGCAGTGCCCCAAGATGAGGATGGACCGGATGACGAGGCTGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGCGCTGCCCTGCCTATCATTCATCCTGCCTTAGGGAGGCAGCAGTCTATGTCTGATAGGGCTAAGAATGCAATGCAAGGGTATTTGAATCACTTTTTGAGTAACATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTGTCATTTTCACCAGAATATGGCTCAAAGTTGAAGGAGGATTATGTCATGGTGAAGCATCTACCTAAAATTGCAAAGGAAGACGACGCTAGGAAATGTTGTCTATGCCTACGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGATTCTTGGCCTTGTTGGGAGATCCATTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCTGATGCCAATGGAGATGGACGAGTATCTTTGGCTAAGGAAATTAAGGAGCGAAATCCGTTGCGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATAAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGGTGGTGTCATCCTCATCGTTTCGGTTCTTATGCACCACCAAGGGGTTTGACTGAAGATGGTAGTAAGGCCCAGTGGTTCATCGATGGCCTAGCAGCTTTTGAAGCTATTTCCGTTTCCATTGAACGGGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATTTGCGGCGACCTTTTGTTTCAAATGCTTCGTCTAGGCTCGATGATTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAGAAAACTTCTTGGCATCCATGAGAATGTGAGAGTATTACGTTACCCTGACCACTTCTCTAGTGGCGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTAGATTTATGCTTTGGTCGTTACGATACACCCGAACATAAAGTTGGTGATTGTCCTCCTTCGGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAGGAAATATCCCCGCATGCCATGGCATGATGTCCACTGTGCACTTTGGGGGCCACCTTGTCGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAACGAGCAGGCAATTCCGTTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGGCAATTCTAGAGGAACAACAATTCAGGATTCATTTTCTCGAGGATCATCTTTCCAGGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACCCGATGCTGAAAATGAAGGTCCAAAATTAAACGGACTGGTGCCCGTTGGCAGTCCCCTTGATCAGCCAAGTAAGGTCAGCAGCAGTCTTCCTTTCTCTTTCAGGAAGATCAAAGTTGAACCCATAGGACCAGATATGCCTCTGAAAGGCTTTGTTGATGATCTTGACCATTTGGATTCCCATGGAAAGTCGTCTGGAGATGGGAAAACACATCATCATTTCAAAAGCTCGGAGTTTGAGTGGTGGGAAAAACAAGATAGGGAACATCATGGTGGCTTCACAAATGAATCTGGACAAGTTGGTCCATGCGCTTCATGTCGTTGCCAGGTCATAAGAAGTGTCAGTCAGTGGTCTGCTGGGACAAGCCGAACTGAAGACAGCATTCACATTGCATATTGTTCTCTTATTGAGAAAGCAGAACATTTTATCTATATTGAGAATCAATTTTTTATATCAGGCCTCGCAGGAGATGAATCAATACGGAACCGTGTGTTAGAAGCACTCTACCGTCGGATAATGAGAGCCCACCGTGAAAAGAAGACGTTTCGGGTTATTGTTGTCATACCACTCTTACCTGGATTTCAGGGGGGTCTGGATGACAGCGGTGCAGCATCGGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGCCGAGGACCAAATTCAATGATGCATAACCTTTATGATCTTCTTGGTTCAAAAGTACAGGAGTATATATCATTTTATGGTCTCAGATCTTATGGTAAACTCTTTGATGGTGGTCCTGTAGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATCGATGATTGTATCGCTTTGATTGGATCGGCTAATATCAACGACAGGAGTTTACTCGGTTCTAGGGATTCTGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCATATATGGGAGAACAACCATGGAAAGCAGGAAAGTTTTGCTGGAGTCTCCGCCTTTCTCTTTGGTCTGAACATCTTGGTCTTCGTCCTGGACAGATCGATCAAATAGTTGATCCAGTTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCTAAGACAAACACCGCAATATACCAAGACGTTTTTTCTTGCCTACCGAGCGACCTCATAAACTCCAGAGCTGGATTGAGACAAAGCGTGGCGATGTGGAAGGAGAAACTGGGGCACACAACAATAGACTTAGGGATTGCACCAGAGAAGCTTGAGGTTTATAAGAATGGAGAAATTGAAAAGATTGATCCAATGGAGAGATTAAGTTCAGTGAAAGGGCATCTTGTTTCCTTCCCATTGGAATTCCTGAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTACTATGCATCTCAAGTTTTTCATTAA 3555 43.77 MADWRTDSLHDPGNDPPYPISWAFRKTKKKTFNENKFRSLDSSVSVFRGLRVFNRGCVRSNEAAVALDRLGMGSEQLVDGGGPRYVQMQSEPPTATMSSFFSFHHDAPEPTRIFDELPNATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDHTAVPQDEDGPDDEADPLHHDESSKNRDVPSSAALPIIHPALGRQQSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGSKLKEDYVMVKHLPKIAKEDDARKCCLCLRFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDANGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAISVSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDDLLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRRKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSFGNSRGTTIQDSFSRGSSFQDIPLLLPQEADGPDAENEGPKLNGLVPVGSPLDQPSKVSSSLPFSFRKIKVEPIGPDMPLKGFVDDLDHLDSHGKSSGDGKTHHHFKSSEFEWWEKQDREHHGGFTNESGQVGPCASCRCQVIRSVSQWSAGTSRTEDSIHIAYCSLIEKAEHFIYIENQFFISGLAGDESIRNRVLEALYRRIMRAHREKKTFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGPNSMMHNLYDLLGSKVQEYISFYGLRSYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGSRDSEIAIVIEDNELINSYMGEQPWKAGKFCWSLRLSLWSEHLGLRPGQIDQIVDPVADSTYKDTWMATAKTNTAIYQDVFSCLPSDLINSRAGLRQSVAMWKEKLGHTTIDLGIAPEKLEVYKNGEIEKIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1870475 1883256 + CmaCh17G003460.1 Cma17g00346 312241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00346 1184 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 981 1008 IPR001736 GO:0003824
Cma17g00346 1184 Pfam PLD-like domain 854 1030 IPR025202 -
Cma17g00346 1184 PANTHER PHOSPHOLIPASE 102 1181 - -
Cma17g00346 1184 SUPERFAMILY Phospholipase D/nuclease 393 667 - -
Cma17g00346 1184 PIRSF PLD_euk 109 1184 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cma17g00346 1184 Pfam Phospholipase D Active site motif 548 575 IPR001736 GO:0003824
Cma17g00346 1184 SUPERFAMILY Phospholipase D/nuclease 820 1031 - -
Cma17g00346 1184 CDD PH_PLD 264 411 - -
Cma17g00346 1184 Gene3D - 310 411 IPR011993 -
Cma17g00346 1184 CDD PLDc_vPLD1_2_yPLD_like_1 441 586 - -
Cma17g00346 1184 CDD PLDc_vPLD1_2_yPLD_like_2 841 1025 - -
Cma17g00346 1184 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 548 575 IPR001736 GO:0003824
Cma17g00346 1184 SUPERFAMILY PH domain-like 317 411 - -
Cma17g00346 1184 MobiDBLite consensus disorder prediction 194 224 - -
Cma17g00346 1184 ProSiteProfiles PH domain profile. 322 413 IPR001849 -
Cma17g00346 1184 SMART PH_update 287 415 IPR001849 -
Cma17g00346 1184 PANTHER PHOSPHOLIPASE D 102 1181 IPR015679 -
Cma17g00346 1184 Gene3D Endonuclease Chain A 436 671 - -
Cma17g00346 1184 Gene3D Endonuclease Chain A 804 1040 - -
Cma17g00346 1184 SMART pld_4 548 575 IPR001736 GO:0003824
Cma17g00346 1184 SMART pld_4 981 1008 IPR001736 GO:0003824
Cma17g00346 1184 Coils Coil 169 189 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01245 Cma17g00346 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00346 Cma-Chr17:1870475 Cma03g00651 Cma-Chr3:5505034 3.66E-19 dispersed
Cma17g00346 Cma-Chr17:1870475 Cma05g01093 Cma-Chr5:8617989 0 wgd
Cma17g00346 Cma-Chr17:1870475 Cma08g01245 Cma-Chr8:7606619 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00346 K01115 - csv:101211856 2126.67