Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00347 ATGGTGCTGTTTCCGGGAGTTATTGAAGGAATGGTCAGAAACATGTCGATAAAGAAAAAGAGTAATGAAGACGGCGAGAAAGAAGCGGCTCGAGAAATGGCGAAAGAGGCGAAAAGGAACAAATCCATGATTTGTTTATCCGGAAGTGTTAAAACCAGCAAGTTTGATGATATGGCTTATGTTTGCACGAAAAGAGGAAATAAAGGAATCAATCAAGATTCTCTTGTTGTCTGGGAGGACTATGGTTGCCAAGGAGACGTAGTTTTCTGTGGGATCTTTGATGGACATGGTCCTTGGGGCCACATGATTAGCAAACAGGTCAGAAAGTCTCTGCCTGTTGAATTGCTGACCAATTGGCAGCAAAACCTTTCCATGGAAGCCGACCAAAACCTTTTTCCTTTCAACATATGGAAGCAATCTTGCTTAAAATCATATGCCGCCATTGATGAGGAGCTCAAGCAACACCCTCGCATTGATTCCTTTTACAGTGGCACAACTGCTTTAACTGTGGTTAAACAGGGCCGACATCTTGTGGTTGCAAATGCTGGCGATTCACGAGCTGTGTTGGCGGTAACTTCTGATGACGGCTGCTTGAAACCAGTTCAACTCTCCGTTGATTTCAAACCTAATTTGCCTGAGGAAGCTGAGAGAATAAAACAATCGAGAGGGCGAGTGGTATGCTTAAAGGACGAGCCGGGGGTCTACAGAGTGTGGACTCCCAACTCGGGCACGCCAGGTTTGGCCATTTCCAGAGCTTTCGGCGATTACTGCACCAAGCAGTACGGCCTCATTTCTGTGCCTGATGTTAGCCACCGAACCATTACCTCTGGAGATCAGTTCGTCATTGTGGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCAGTTCATATAGTTTCTTCAACGTCAAATAGGGAAATGTCGGCCAAAAAACTAGTGGACTGTGCTGCTCGTGCATGGAAATCAAAGAAACGAGGCATTGCAAGAGACGACATGTCGGCTATTTGCCTCTTTTTTAATGCTTCCCCCACAAAAAATGATCTAGACGGCACTCCGCTTCGCATCCCAATCCGCTCCGAGTTTCAGGTTCAGATTGCGTTGCCTTTCTCTTTCTGTAGTGCGTACTCTCCTCTTTGCTCCGGCTCTAGTCTCGTTCTTCGAAGTAAACTCCGGGAGATATCTCCGATCAACGCGTCGTTGAACAGCGGAATGTCGAATTCCATGGTGAATGAAGCAGAACCGAAGGAACTGCGAGATGAGTCCGATTTTGAAGCCATCTTCTCCGGCGGTGATTTCATTTCCGTTTGTGGCTTTGGTTCTCTTCTCTCTGAGCGGAGTGCACGCGTTTTCGGAAATGTGGCTCGTATATTCTTTGAGCGTGGCATTGCTAAACCTGAAACCAAGGAGATCTCAAGCTTGTGTGCTGAGCCTTGCGAAGGAGAGACTATCATTGTGACGGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTTATACAGAGAGAGATTGAGTTTCGATTTCTAGCTGTTCTACTTGAAACATTAGATGGAAAGCTATATAATAAACCAGCGGTGCTTTGTTCTCGATCAACTGATGAGGAATTTTTCCAAGTGAGATGCAAAGGAAATAAGGACATTTTTCTTCAGCATTATGATTGTCATATTATTGACAAGATCTGGAGAGATGATATCTTACCTTGTCGCGTCTATCTTCGACATTGTATTTTAGCTGCAAAAAACCTGGGTGAAACAGCTTATAACAACTTTCTGAATCACACTTTCCTTGGAGATCGCAGTACAACCATCCATGAATATTTAGCCTCTAGTGAACTGCAGAGGAGGCTTATTGATCCTTGGAAGCCTGGAGAGATATTAGCGGAGATTAGATACGAGCCTTCTCTTCTTTTCTGCCAAGTGCTGCCATGA 1932 45.13 MVLFPGVIEGMVRNMSIKKKSNEDGEKEAAREMAKEAKRNKSMICLSGSVKTSKFDDMAYVCTKRGNKGINQDSLVVWEDYGCQGDVVFCGIFDGHGPWGHMISKQVRKSLPVELLTNWQQNLSMEADQNLFPFNIWKQSCLKSYAAIDEELKQHPRIDSFYSGTTALTVVKQGRHLVVANAGDSRAVLAVTSDDGCLKPVQLSVDFKPNLPEEAERIKQSRGRVVCLKDEPGVYRVWTPNSGTPGLAISRAFGDYCTKQYGLISVPDVSHRTITSGDQFVIVATDGVWDVMSNQEAVHIVSSTSNREMSAKKLVDCAARAWKSKKRGIARDDMSAICLFFNASPTKNDLDGTPLRIPIRSEFQVQIALPFSFCSAYSPLCSGSSLVLRSKLREISPINASLNSGMSNSMVNEAEPKELRDESDFEAIFSGGDFISVCGFGSLLSERSARVFGNVARIFFERGIAKPETKEISSLCAEPCEGETIIVTVFEIKKSEIPAFIQREIEFRFLAVLLETLDGKLYNKPAVLCSRSTDEEFFQVRCKGNKDIFLQHYDCHIIDKIWRDDILPCRVYLRHCILAAKNLGETAYNNFLNHTFLGDRSTTIHEYLASSELQRRLIDPWKPGEILAEIRYEPSLLFCQVLP 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1887173 1898546 + CmaCh17G003470.1 Cma17g00347 312242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00347 643 Pfam Protein phosphatase 2C 83 319 IPR001932 -
Cma17g00347 643 Gene3D - 47 343 IPR036457 -
Cma17g00347 643 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 1 349 - -
Cma17g00347 643 SMART PP2C_4 46 339 IPR001932 -
Cma17g00347 643 PANTHER ALPHABET, ISOFORM E-RELATED 1 349 - -
Cma17g00347 643 SUPERFAMILY PP2C-like 57 342 IPR036457 -
Cma17g00347 643 Coils Coil 20 40 - -
Cma17g00347 643 CDD PP2Cc 58 341 IPR001932 -
Cma17g00347 643 ProSiteProfiles PPM-type phosphatase domain profile. 58 341 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01246 Cma17g00347 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01048 Cma-Chr12:8302692 Cma17g00347 Cma-Chr17:1887173 2.22E-150 dispersed
Cma17g00347 Cma-Chr17:1887173 Cma16g01014 Cma-Chr16:7794965 8.52E-106 dispersed
Cma17g00347 Cma-Chr17:1887173 Cma05g01091 Cma-Chr5:8604749 3.81E-153 wgd
Cma17g00347 Cma-Chr17:1887173 Cma08g01246 Cma-Chr8:7617565 7.04E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00347 - - csv:101214034 604.364