Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00351 ATGGATCCGATCCACACGAAGGGAACGATGCCTACTTCGACTTCTATTTCTGCTAGAAAGACTGCCGATATGGGTTGTGATCAGTTCCCGGCGGGCCTTCGCGTCCTGGTTGTGGACGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAATCGGGCTGAGATTGCATTATCCATGCTTCGTGAGAACAAAAATGGATTTGATATTGTGTTAAGCGATGTGCATATGCCGGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGTCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCAGATGATGGAAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGCGACTACCTGATCAAACCGGTTCGAATCGAAGCGCTCAGGAACATATGGCAACATGTAGTTCGGAAGAGAAAGAGTGAATGGAAGGATTTAGAGCAATCTGGAAGCATGGACGATGGAGATCGGGATCAAAATCTATCTGAAGGTGCAAACTATTCATCTTCGGCGTATGATGGAAGTTGGAACAGCTCGAAGAGGAAGAGGGATGCTGAAGAAGAGCTCGAGGAGAGGGACGATACATCAACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAATTTGTCATAGCAGTTGATCAGCTAGGCATTGACAAGGCTGTCCCTAAAAAGATATTGGAGTTGATGAACGTTCCGGGGCTTTCTCGAGAAAACGTTGCCAGTCACCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGGGTATCGCCACACCCAAGTAATCTGAACAATGCTTTTATGAACCCTCAAGATCATCCTCCTTTTGGGTCAATGGCTTCATACAATGGGATTGATCTTCAGACGCTTTTGGTCACCGGTCAACTCTCGCCGCAAAGTCTCGCTGCCCTTCAAGCCACCGGACTTCGTCGGCCTACCGCGAAATCTAGCTTACCGATGGCCCTTGTTGATCAGACCAACATATTCAGCTTTGAAAATCCAAAACTGAGGTTTGGTGAGGACCAAACACAACACCTGAATAAAACTAAACCTGCAAGCTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCACCCTTCTGTGCAGACTCAGAGGAACATGAACATGCCACTCAATATCAAGAGCGAACATGGTGGCACTCAGCTAATGCATTTGTCTCAGCAGCAAACTGTAGGGCAGACTCTAAATAACTCTACTGTTAGCCACCTACCTGGAATCCCATCGACATTAAGGAACCCGATCATATCAGGTAGCATTACAACGGGGAACGGGACTGCTGATAATAGCCACGGACCTCGATACAACCTAGTTTCGCCCACATCGGTTATGGTGAACTATCCAATGAGCCAAACCACAGAAGTGTTTCAAGAAGAAATGAATTCAAATCTAAAAGTATCGAGCGGAGTAATGCGTTATGATGTTTTTAGTGACTTGCATATGCAGAAAGCCCATGACTGGGATTATCAAAATGTAAGCACTTTGGCCTTTGGTACTCCACACCATGGAAACTTCATTCACCATAGCTTTGATATCTCACCCTCATCTTTGATTCATCACGGTTTTCCTTCAAGCCAAACAAATGGAGAAAATCATAATTCATCAGTCAATGGGAAGACGAACTTTCCGTTTTTGGATTCAACTCAACCTGGGATTCCACAAAGTGTCGCCCAAAACTCGTTTTTCGATCCCGGGGAGGTCAAGAACCAGAACATCCCTGATGCAAGCTATCAAACTGACCTGATATCTGAGGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTCTCAAACAAGAACAACAAGAAGACAATGGGTCGGTCGACTTTAGCGGATACCAAACGGAGAATATTTGTGTTTAG 1953 45.21 MDPIHTKGTMPTSTSISARKTADMGCDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKSEWKDLEQSGSMDDGDRDQNLSEGANYSSSAYDGSWNSSKRKRDAEEELEERDDTSTLKKPRVVWSVELHQQFVIAVDQLGIDKAVPKKILELMNVPGLSRENVASHLQKYRLYLRRLSGVSPHPSNLNNAFMNPQDHPPFGSMASYNGIDLQTLLVTGQLSPQSLAALQATGLRRPTAKSSLPMALVDQTNIFSFENPKLRFGEDQTQHLNKTKPASLFHGIPTKMEPKQLANMQHPSVQTQRNMNMPLNIKSEHGGTQLMHLSQQQTVGQTLNNSTVSHLPGIPSTLRNPIISGSITTGNGTADNSHGPRYNLVSPTSVMVNYPMSQTTEVFQEEMNSNLKVSSGVMRYDVFSDLHMQKAHDWDYQNVSTLAFGTPHHGNFIHHSFDISPSSLIHHGFPSSQTNGENHNSSVNGKTNFPFLDSTQPGIPQSVAQNSFFDPGEVKNQNIPDASYQTDLISEDFGQDELLGVFLKQEQQEDNGSVDFSGYQTENICV 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1926092 1931329 + CmaCh17G003510.1 Cma17g00351 312246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00351 650 CDD REC_typeB_ARR-like 35 149 - -
Cma17g00351 650 Gene3D - 33 166 - -
Cma17g00351 650 PIRSF RR_ARR_type-B 13 641 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cma17g00351 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Cma17g00351 650 MobiDBLite consensus disorder prediction 174 189 - -
Cma17g00351 650 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Cma17g00351 650 Gene3D - 210 272 - -
Cma17g00351 650 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Cma17g00351 650 SUPERFAMILY CheY-like 32 156 IPR011006 -
Cma17g00351 650 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Cma17g00351 650 SMART REC_2 33 145 IPR001789 GO:0000160
Cma17g00351 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 487 624 - -
Cma17g00351 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 486 - -
Cma17g00351 650 MobiDBLite consensus disorder prediction 156 173 - -
Cma17g00351 650 MobiDBLite consensus disorder prediction 190 208 - -
Cma17g00351 650 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Cma17g00351 650 MobiDBLite consensus disorder prediction 156 208 - -
Cma17g00351 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 487 624 IPR045279 GO:0009736
Cma17g00351 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 486 IPR045279 GO:0009736
Cma17g00351 650 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01548 Cma17g00351 CCT
Cma06g01548 Cma17g00351 ECH
Cma08g01254 Cma17g00351 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00402 Cma-Chr11:1979240 Cma17g00351 Cma-Chr17:1926092 2.88E-56 dispersed
Cma12g00050 Cma-Chr12:187608 Cma17g00351 Cma-Chr17:1926092 4.49E-93 dispersed
Cma14g01602 Cma-Chr14:12043159 Cma17g00351 Cma-Chr17:1926092 0 wgd
Cma17g00351 Cma-Chr17:1926092 Cma06g01548 Cma-Chr6:9701157 0 wgd
Cma17g00351 Cma-Chr17:1926092 Cma08g01254 Cma-Chr8:7655266 0 wgd
Cma17g00351 Cma-Chr17:1926092 Cma08g00447 Cma-Chr8:2518826 3.27E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36641 PF00072 Response_reg 7.30E-22 CL0304 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00351 - K14491 cmos:111460165 1247.65