Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00355 ATGGCTGCCAACGAAAACAGAGGCAGAGGAAGAGAGCTAAAAAAACCTTGTAGGTCAGATACGTACGTAAGCAGTGAGAACCACCAGCGGTTACCGGCGGCTTCAACGGCGGCGTGCCACGATGAACCGGAGGCTAAAAGGCAACGGCGGGTTGCGAAGTACAAGGCCTACGCCGTCGAAAGCAAATTCAAAGCATCGCTTAGGAATGGGATTCGACCCACTTCCTCTTGCACTTTGAGGAGAAAGAAAGAGATAGCAGCGAGGAGAAGAGCGCGAAGCTTCTGGTTTTGGTACTTGTTTCTGTGTAAGGTTACAAATCCAGATGGATCGAAAATGGGAGTTGAGAAAGAAGGTTTGAAAAGTGGTGTTGGGGGATTCTTCCAGTTGTTTGATTGGAGTGCTAAATCGCGGAAGAGATTGTTCTCTAGCACACCGGACGTACAAGAGCGTTTTAGACAAGGGAATATAAGTGCTGGAAACTCTCCATTTTCACAGGTTCATCTGATAGATTTGGATGAATGTGGAAAAAGGAAAAGTATTAAAGGAAGCAGTGATTATAGTTGTTCTTCATCTGTGACTGAAGATGAAGGATACGGAGTTAAGGCCCCTGGGGTAGTCGCTAGGCTTATGGGATTAGATTCATTACCGTCATCCCATTTTTCAGAGCCCTACTTTGCCCCATCATTTGATACTCAGTCTCTTCAAGAAGCTCACAGTCATAGGGGAAGTTTCAATTATGGTCATGATCGCCAAATCATGTTCTCTGGTAATTTGCTTGATCAGGTTGATGACCGTGCAGCTGCCCCTGCCAGGAAACCTTCAGAACCAAAACCTCAGAAAACTCTCAGCAGGCCAATAGAGAAGTTCCAAACAGAAGTCCTCCCTCCTAAATCAGCAAAATCAATTCCAATTACTCACCATAAGCTTTTGTCCCCTATTAAGAGTCCTACTTTCATACCAAGTAAGAATGCTGCTCTCATAATGGAAGCTGCTGCAAAAATAATAGATTCTGGACCTTCAGCAACTACCAAGAGTAAAATGTCTCTGATTGGATCTTCTTCAGCACCTTTGAAATTACAAGCTCCAAAAGAAAAGATAAATATACCACAAAGACTGCCTTCAGTTAGGTCCTCTTCAGTTAGCTTGAAGGTCAAAGAATTAAAAGAAAGGACCGAAGCCTCTCATAAATCAACCAGGTTTCTTGAAACTTCTAGAAAGCCTACTGAATCAAATGCTTCCAGGCTTTTGAAGGGACAATCTATGAACAAAAGCTGGGATGGATCTCAAGATGCATCATCATTCAAGGTCTTACCTGATGTGGAACACGGTTCAAAGAACAAGGGAAAATCCATATCACTTGCAATACAAGCAAAAGTTAATGTACAAAGAAGAGAAAATGTGAATACCGATGGCCATAGAAATTTTACCGGCCCGAAACAACAGACTGAGGTCAAGTCAAGCCAGCCCTTTAAGACACAGACAAACACTAGGAAAAATCTGCATGTGCAATCCTCTGCTTCCAATGCTTCTTGTAAGCAGCCTCTCAAGCAGAACAACCAGAAACAAAACTGCCATGTTGATAGAGTAAAATCAAAGAACTCATTTTCCAACACTGAGGGCCAAAAACCGCTTACTGGAGATTCGTCTTTTGGACGTCGAAGAAATGTAGGACGAGTTGTCGTTGGCTCAAGAGTTGGTGTCAGGAAGTCAGCCTTAGAAACATCTGACAGGGAAAAGGAAGACTTGCATTCTAATGCAAAAAATCTCCCTAGGAAGAAACGGTCAATAGATAGAGATCAACGCTTTGACAAGAAACAGGCCACGGAGAATATGTTAAATGATAAAAACCAGATGTCAGTTCATTCAAATAATATTGTTGATAGAACTTCTAGTAGTTTGGCTCAAGAATGCAGAAAAAATGGCACAGATGTTGTTTCTTTTACATTTACTGCACCACTTACAAGGAAGGCGCCTGGATCTGACACTTCAGGGCACATTGAATCAAAATTTAAAGGGTCGCTTGGACCAGATAGTTTGAAGTCATCCTCAATGGAGTGCAATATTATTGGAGAAAATGCCTTGAGTGCACTTTTAGAGCAGAAGCTAAGAGAATTGATTGATAAGGTCGAGTCCCCTAGCCTTGGATCCATCGTTGGAGGATCTGAGAGTTCTTGTTTATCGACGTCTGATTATCTTTCACACTCTCTTGATACACTCGATACAATGTCGTCAGAGTTGAATGAGAGGAACCAACACAGTAGTTCTGTTCACAGCAAGCCGGCTGGCCAATATAATTTTGATTGCGCTTCAACTGATTCTTTGTCACAAGGATTAAAGCATGAATTCCCGTTAGTTGATGAGATTGAAGAATGTAGCAGCAGTAATAGTATTGTTCCTCACACTGGGCAGTCGCTCAAAGTTCGACATCCGAGTCCCGTCTCTATTCTTGATCATTCGTTTTCTTCAGAAAGCTGTGACTCATCAGATAGTAACAGCAGAGAAGGTAACAAGCTTTGTTCTTCAGTCCAAGGTCAAGATGTTCTTGGCATAGGTTTCTTCAAGTTTAATCCAGTTACTGTTGATACAGAGTTACTAGATTCTGCATCCTCCATAACAGACGAAGCTTCAGCCAGTAAGTTCACTGCTTCATCTATCTCGAAACGTACAAAACGACAGATCGAATGGGAACTTGAATACATAACGGATATACTCAGCAATGTGGAGTTGATGTTTAAGGACTATGTATTGGGGCGTTCTCATGAAGTTATAAATCCTTATCTATTCAATATATTAGAGATTCGAAACAAAGGATCGGGACAAAGCTGCGACGAATCGAGGCTTAGAAGGAAGGCGTTATTTGATTGTGTTCGTGAATGTTTGGACTTGAGATGTAGACAGTATGTAGGTGGAGGATTTAAAATGTGGGAGAAAGGAGTGGGAGTTTTGGGAAGAAAGGAGCAGTTAGCCAAAGAGGTTGTGAAGGAGATTTCAGATTGGAAAGGAATGGGGGATTGTATGGTGGATGAACTGGTAGATAAGGACATGAGTTGCTGGTATGGAAGATGGATGGACTTCGACATTGATGCGTTTACGATCGGAGTCGAAGTCGAGACTCAAATTCTCGATTCTTTAGTTGAAGAAGTGCTTGCTGATATTGTGCTTCCTTGA 3168 42.17 MAANENRGRGRELKKPCRSDTYVSSENHQRLPAASTAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRPTSSCTLRRKKEIAARRRARSFWFWYLFLCKVTNPDGSKMGVEKEGLKSGVGGFFQLFDWSAKSRKRLFSSTPDVQERFRQGNISAGNSPFSQVHLIDLDECGKRKSIKGSSDYSCSSSVTEDEGYGVKAPGVVARLMGLDSLPSSHFSEPYFAPSFDTQSLQEAHSHRGSFNYGHDRQIMFSGNLLDQVDDRAAAPARKPSEPKPQKTLSRPIEKFQTEVLPPKSAKSIPITHHKLLSPIKSPTFIPSKNAALIMEAAAKIIDSGPSATTKSKMSLIGSSSAPLKLQAPKEKINIPQRLPSVRSSSVSLKVKELKERTEASHKSTRFLETSRKPTESNASRLLKGQSMNKSWDGSQDASSFKVLPDVEHGSKNKGKSISLAIQAKVNVQRRENVNTDGHRNFTGPKQQTEVKSSQPFKTQTNTRKNLHVQSSASNASCKQPLKQNNQKQNCHVDRVKSKNSFSNTEGQKPLTGDSSFGRRRNVGRVVVGSRVGVRKSALETSDREKEDLHSNAKNLPRKKRSIDRDQRFDKKQATENMLNDKNQMSVHSNNIVDRTSSSLAQECRKNGTDVVSFTFTAPLTRKAPGSDTSGHIESKFKGSLGPDSLKSSSMECNIIGENALSALLEQKLRELIDKVESPSLGSIVGGSESSCLSTSDYLSHSLDTLDTMSSELNERNQHSSSVHSKPAGQYNFDCASTDSLSQGLKHEFPLVDEIEECSSSNSIVPHTGQSLKVRHPSPVSILDHSFSSESCDSSDSNSREGNKLCSSVQGQDVLGIGFFKFNPVTVDTELLDSASSITDEASASKFTASSISKRTKRQIEWELEYITDILSNVELMFKDYVLGRSHEVINPYLFNILEIRNKGSGQSCDESRLRRKALFDCVRECLDLRCRQYVGGGFKMWEKGVGVLGRKEQLAKEVVKEISDWKGMGDCMVDELVDKDMSCWYGRWMDFDIDAFTIGVEVETQILDSLVEEVLADIVLP 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1951074 1958907 + CmaCh17G003550.1 Cma17g00355 312250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00355 1055 MobiDBLite consensus disorder prediction 471 522 - -
Cma17g00355 1055 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 370 1053 - -
Cma17g00355 1055 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 112 371 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 570 610 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 568 624 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 404 431 - -
Cma17g00355 1055 Pfam Domain of unknown function (DUF4378) 896 1047 IPR025486 -
Cma17g00355 1055 Pfam DUF761-associated sequence motif 190 221 IPR032795 -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 529 545 - -
Cma17g00355 1055 Pfam Domain of unknown function (DUF3511) 41 72 IPR021899 -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 1 36 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 7 21 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 386 403 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 386 431 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 462 551 - -
Cma17g00355 1055 PANTHER EXPRESSED PROTEIN 370 1053 - -
Cma17g00355 1055 PANTHER EXPRESSED PROTEIN 112 371 - -
Cma17g00355 1055 MobiDBLite consensus disorder prediction 653 673 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00355 - - - csv:101212589 1463.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01259 Cma17g00355 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01040 Cma-Chr12:8247535 Cma17g00355 Cma-Chr17:1951074 1.85E-58 dispersed
Cma14g00793 Cma-Chr14:4017829 Cma17g00355 Cma-Chr17:1951074 7.22E-13 dispersed
Cma08g01259 Cma-Chr8:7673711 Cma17g00355 Cma-Chr17:1951074 0 transposed
Cma17g00355 Cma-Chr17:1951074 Cma05g01083 Cma-Chr5:8545277 6.60E-96 wgd
Cma17g00355 Cma-Chr17:1951074 Cma08g01258 Cma-Chr8:7670441 1.66E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g105 Blo01g00057 . Bda03g01163 Bda08g00308 Bpe04g01107 . Bma04g01138 Bma05g01020 Cmo08g01229 Cmo17g00345 . . . . . . . . . . . . . . Cla06g00443 Cam06g0471 Cec06g0476 Cco06g0474 Clacu06g0457 Cmu06g0458 Cre06g1233 . . Cone7ag0113 Cone4ag0117 . Csa06g01760 Chy11g01551 . . . . . Bpe05g00820 . . . . . . Cma08g01259 Cma17g00355 Car08g01130 Car17g00327 Cpe12g00305 Cpe17g00051 Bhi12g01905 . . . . . . . . . . . . . Lsi09g01471 . . Cme11g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004358 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00355 Cma_Chr17 FPKM 3.827557 4.562404 1.740476 1.471409 12.591957 10.198912 12.661813 0.205866 0.243435 0.156592