Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00358 ATGTCTCTTTCCATGAAAGATGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCAGGCAATACTATGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGATCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCTCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAACCCAACCTTTGTTCGTCGATGTTATTGGCTCCTTGATAAGTCTCTTGAACACATTGTCCTTGTTCATTACCGCGAAACAAAAGAGTGGCAGAGTTCTCCATCTACATCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAGCTCATTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTACTCATGTCTATTCTGTTGGTGGAAATGAATTGTCAGAGCCTAGTGATACTACAACAGTCATGGCTCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGACGAACGAGCCTCTCAAACCTGCCATGACTAAAGAAGACAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAATGTGGCCAACAAGATCTTCGGGGTGATAACTTCATTTAATAATCCAGTTGAGTCAATTGGGAGTGCCAACAGCATAGGAAGTGTGAATATGTCATTAATGGGTGGTCAAACGAATTTGAATGTTGAGAGTAGGGAATCCATTCCAATTAATTCGTTGGACAATTTGTTAAATGATGGAGGATTGCAAAGTCAGGACAGCTTAGGACAATGGATCAATGAAGTCATCACTGACTCGCCTGGTTCAGTCATTGATCCTGCTATTGAGCCGTCCATTTCATCTGTTCACAATTCCTATTGTGATTCGACATTATATCACCATCACTCTTCGGTGGAGCAAATTTTTAACATAACTGCTGTCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACAAAGATTGTAATCATTGGATATTTTTCTGATGAGTACGTACATCTAGCGAAGTCCAAAATATCTGTTGTTTGTGGTGATACTAGTATTAATGCTGATTTTGTTCAACCTGGAGTTTATAGCTGTCAGGTAGAACCACGTTCACCGGGACTTGTACATTTATACCTGAGCTTAGTTGGTCACAAACCTATTAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACAAGTGCCTGAAGTTACGTCAGAACAGATCCTCGAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGATGTTCTCTACATCCAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTGCCCTGAACGACGCCAAGAAACTAGCTGTCAAAACTTCTGGCATTTCTGATGGTTGGATTTATTTGTTAAAATCAGTTACAGAAAATAAAACTCCAATTCCACAAGCAAGAGAGGGTGTTCTTGAGATGATATTGAGAAGCAGGTTGAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATGTTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCTATAAACTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGGATGGTAGCTGCTCTTTTATCTGTGGGGGCAAAGCCAAGCTTGATCACTGATCCCACATCAAAGAACCCTCTGGGATATACGGCAGCAGATCTTGCATCTATAAATGGTTTTAATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCTCATTTTGAAGAGATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGAAACTAATACAATACCTGATACCACGAACTTTGATAGCGTCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTATCGGACAGCAGCTGATGCAGCAGCACGCATACAAGCAGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTGACGCAATTGAACTCTCCACCCCTGAAGCTGAAGCACGTGGTATTGTTGCGGCCATGAAAATTCAACATGCCTTCCGCAACTTTGAAACACGAAAAAAAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACGTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAATTATTAGGATTCAAGCTGCATTTAGAGGTTTCCAAGTGCGAAGACAGTATCGCAAGATCGTTTGGTCGGTAGGAATTGTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCAGCTGAAGTGACAGAATATCAGGAAACTGGCATGGAAGAGGACTTCTATCGCGTATCTCAGAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTCCGATCAAAGAAAGTACAAGAGGAGTATCGTCGGATGAAGTTAACCCATGCTGAAGCAGCGTTGGAATATGAAGAGCTTTCACATCCTGATATGAAATTGAATGGCTGA 2748 41.89 MSLSMKDDVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIQAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETKEWQSSPSTSMNSNSGSVSNPSAHWLLSEELDSRATHVYSVGGNELSEPSDTTTVMAHEQRLHEINTLEWDELLVTNEPLKPAMTKEDKLSCFDQQNQVPINVANKIFGVITSFNNPVESIGSANSIGSVNMSLMGGQTNLNVESRESIPINSLDNLLNDGGLQSQDSLGQWINEVITDSPGSVIDPAIEPSISSVHNSYCDSTLYHHHSSVEQIFNITAVSPAWAFSTEKTKIVIIGYFSDEYVHLAKSKISVVCGDTSINADFVQPGVYSCQVEPRSPGLVHLYLSLVGHKPISQVLNFEYRAPLLQVPEVTSEQILEWEEFQVQMRLAHLMFSTSKSLSIMSTKLSPTALNDAKKLAVKTSGISDGWIYLLKSVTENKTPIPQAREGVLEMILRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAMLGYTWAVHLFVWSGLSINFRDKSGWTALHWAAYYGRERMVAALLSVGAKPSLITDPTSKNPLGYTAADLASINGFNGLAAYLSEKALVSHFEEMSLAGNVSGSLETNTIPDTTNFDSVSEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTDAIELSTPEAEARGIVAAMKIQHAFRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQIIRIQAAFRGFQVRRQYRKIVWSVGIVEKAILRWRLKRKGFRGLQVAPAEVTEYQETGMEEDFYRVSQKQAEERVERAVIRVQAMFRSKKVQEEYRRMKLTHAEAALEYEELSHPDMKLNG 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1984908 1995194 + CmaCh17G003580.1 Cma17g00358 312253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00358 915 ProSiteProfiles Ankyrin repeat region circular profile. 603 628 - -
Cma17g00358 915 ProSiteProfiles IQ motif profile. 752 778 IPR000048 GO:0005515
Cma17g00358 915 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 909 - -
Cma17g00358 915 Pfam Ankyrin repeats (3 copies) 567 631 IPR002110 GO:0005515
Cma17g00358 915 SMART ANK_2a 603 632 IPR002110 GO:0005515
Cma17g00358 915 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cma17g00358 915 ProSiteProfiles IQ motif profile. 768 795 IPR000048 GO:0005515
Cma17g00358 915 SUPERFAMILY E set domains 366 453 IPR014756 -
Cma17g00358 915 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 909 - -
Cma17g00358 915 SUPERFAMILY Ankyrin repeat 565 665 IPR036770 -
Cma17g00358 915 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Cma17g00358 915 Pfam IPT/TIG domain 367 452 IPR002909 -
Cma17g00358 915 ProSiteProfiles IQ motif profile. 870 898 IPR000048 GO:0005515
Cma17g00358 915 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Cma17g00358 915 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cma17g00358 915 SMART iq_5 790 812 IPR000048 GO:0005515
Cma17g00358 915 SMART iq_5 868 890 IPR000048 GO:0005515
Cma17g00358 915 SMART iq_5 767 789 IPR000048 GO:0005515
Cma17g00358 915 SMART iq_5 714 736 IPR000048 GO:0005515
Cma17g00358 915 Gene3D - 527 666 IPR036770 -
Cma17g00358 915 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cma17g00358 915 Gene3D Immunoglobulins 359 456 IPR013783 -
Cma17g00358 915 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Cma17g00358 915 Gene3D - 769 815 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00358 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1464.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma14g01565 Cma17g00358 CCT
Cma08g01266 Cma17g00358 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00358 Cma-Chr17:1984908 Cma17g01441 Cma-Chr17:9468880 1.11E-119 dispersed
Cma17g00358 Cma-Chr17:1984908 Cma08g01266 Cma-Chr8:7703562 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36645 PF03859 CG-1 4.10E-45 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00358 Cma_Chr17 FPKM 13.936428 15.418283 20.528923 19.148626 15.02982 15.755193 15.702997 17.835115 18.245533 17.480379