Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00358 ATGTCTCTTTCCATGAAAGATGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGTCCAAATGAAATCCAGGCAATACTATGTAACTACAAATATTTTGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGATCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCTCATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTTGATAACCCAACCTTTGTTCGTCGATGTTATTGGCTCCTTGATAAGTCTCTTGAACACATTGTCCTTGTTCATTACCGCGAAACAAAAGAGTGGCAGAGTTCTCCATCTACATCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAGCTCATTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTACTCATGTCTATTCTGTTGGTGGAAATGAATTGTCAGAGCCTAGTGATACTACAACAGTCATGGCTCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGACGAACGAGCCTCTCAAACCTGCCATGACTAAAGAAGACAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAATGTGGCCAACAAGATCTTCGGGGTGATAACTTCATTTAATAATCCAGTTGAGTCAATTGGGAGTGCCAACAGCATAGGAAGTGTGAATATGTCATTAATGGGTGGTCAAACGAATTTGAATGTTGAGAGTAGGGAATCCATTCCAATTAATTCGTTGGACAATTTGTTAAATGATGGAGGATTGCAAAGTCAGGACAGCTTAGGACAATGGATCAATGAAGTCATCACTGACTCGCCTGGTTCAGTCATTGATCCTGCTATTGAGCCGTCCATTTCATCTGTTCACAATTCCTATTGTGATTCGACATTATATCACCATCACTCTTCGGTGGAGCAAATTTTTAACATAACTGCTGTCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACAAAGATTGTAATCATTGGATATTTTTCTGATGAGTACGTACATCTAGCGAAGTCCAAAATATCTGTTGTTTGTGGTGATACTAGTATTAATGCTGATTTTGTTCAACCTGGAGTTTATAGCTGTCAGGTAGAACCACGTTCACCGGGACTTGTACATTTATACCTGAGCTTAGTTGGTCACAAACCTATTAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACAAGTGCCTGAAGTTACGTCAGAACAGATCCTCGAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGATGTTCTCTACATCCAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCACTGCCCTGAACGACGCCAAGAAACTAGCTGTCAAAACTTCTGGCATTTCTGATGGTTGGATTTATTTGTTAAAATCAGTTACAGAAAATAAAACTCCAATTCCACAAGCAAGAGAGGGTGTTCTTGAGATGATATTGAGAAGCAGGTTGAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATGTTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCTATAAACTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGGATGGTAGCTGCTCTTTTATCTGTGGGGGCAAAGCCAAGCTTGATCACTGATCCCACATCAAAGAACCCTCTGGGATATACGGCAGCAGATCTTGCATCTATAAATGGTTTTAATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCTCATTTTGAAGAGATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGAAACTAATACAATACCTGATACCACGAACTTTGATAGCGTCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTATCGGACAGCAGCTGATGCAGCAGCACGCATACAAGCAGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTGACGCAATTGAACTCTCCACCCCTGAAGCTGAAGCACGTGGTATTGTTGCGGCCATGAAAATTCAACATGCCTTCCGCAACTTTGAAACACGAAAAAAAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACGTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAATTATTAGGATTCAAGCTGCATTTAGAGGTTTCCAAGTGCGAAGACAGTATCGCAAGATCGTTTGGTCGGTAGGAATTGTTGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCAGCTGAAGTGACAGAATATCAGGAAACTGGCATGGAAGAGGACTTCTATCGCGTATCTCAGAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTCCGATCAAAGAAAGTACAAGAGGAGTATCGTCGGATGAAGTTAACCCATGCTGAAGCAGCGTTGGAATATGAAGAGCTTTCACATCCTGATATGAAATTGAATGGCTGA 2748 41.89 MSLSMKDDVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIQAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETKEWQSSPSTSMNSNSGSVSNPSAHWLLSEELDSRATHVYSVGGNELSEPSDTTTVMAHEQRLHEINTLEWDELLVTNEPLKPAMTKEDKLSCFDQQNQVPINVANKIFGVITSFNNPVESIGSANSIGSVNMSLMGGQTNLNVESRESIPINSLDNLLNDGGLQSQDSLGQWINEVITDSPGSVIDPAIEPSISSVHNSYCDSTLYHHHSSVEQIFNITAVSPAWAFSTEKTKIVIIGYFSDEYVHLAKSKISVVCGDTSINADFVQPGVYSCQVEPRSPGLVHLYLSLVGHKPISQVLNFEYRAPLLQVPEVTSEQILEWEEFQVQMRLAHLMFSTSKSLSIMSTKLSPTALNDAKKLAVKTSGISDGWIYLLKSVTENKTPIPQAREGVLEMILRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAMLGYTWAVHLFVWSGLSINFRDKSGWTALHWAAYYGRERMVAALLSVGAKPSLITDPTSKNPLGYTAADLASINGFNGLAAYLSEKALVSHFEEMSLAGNVSGSLETNTIPDTTNFDSVSEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTDAIELSTPEAEARGIVAAMKIQHAFRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQIIRIQAAFRGFQVRRQYRKIVWSVGIVEKAILRWRLKRKGFRGLQVAPAEVTEYQETGMEEDFYRVSQKQAEERVERAVIRVQAMFRSKKVQEEYRRMKLTHAEAALEYEELSHPDMKLNG 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1984908 1995194 + CmaCh17G003580.1 Cma17g00358 312253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00358 915 ProSiteProfiles Ankyrin repeat region circular profile. 603 628 - -
Cma17g00358 915 ProSiteProfiles IQ motif profile. 752 778 IPR000048 GO:0005515
Cma17g00358 915 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 909 - -
Cma17g00358 915 Pfam Ankyrin repeats (3 copies) 567 631 IPR002110 GO:0005515
Cma17g00358 915 SMART ANK_2a 603 632 IPR002110 GO:0005515
Cma17g00358 915 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cma17g00358 915 ProSiteProfiles IQ motif profile. 768 795 IPR000048 GO:0005515
Cma17g00358 915 SUPERFAMILY E set domains 366 453 IPR014756 -
Cma17g00358 915 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 909 - -
Cma17g00358 915 SUPERFAMILY Ankyrin repeat 565 665 IPR036770 -
Cma17g00358 915 ProSiteProfiles IQ motif profile. 791 815 IPR000048 GO:0005515
Cma17g00358 915 Pfam IPT/TIG domain 367 452 IPR002909 -
Cma17g00358 915 ProSiteProfiles IQ motif profile. 870 898 IPR000048 GO:0005515
Cma17g00358 915 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Cma17g00358 915 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cma17g00358 915 SMART iq_5 790 812 IPR000048 GO:0005515
Cma17g00358 915 SMART iq_5 868 890 IPR000048 GO:0005515
Cma17g00358 915 SMART iq_5 767 789 IPR000048 GO:0005515
Cma17g00358 915 SMART iq_5 714 736 IPR000048 GO:0005515
Cma17g00358 915 Gene3D - 527 666 IPR036770 -
Cma17g00358 915 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cma17g00358 915 Gene3D Immunoglobulins 359 456 IPR013783 -
Cma17g00358 915 Pfam IQ calmodulin-binding motif 793 812 IPR000048 GO:0005515
Cma17g00358 915 Gene3D - 769 815 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g01565 Cma17g00358 CCT
Cma08g01266 Cma17g00358 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00358 Cma-Chr17:1984908 Cma17g01441 Cma-Chr17:9468880 1.11E-119 dispersed
Cma17g00358 Cma-Chr17:1984908 Cma08g01266 Cma-Chr8:7703562 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36645 PF03859 CG-1 4.10E-45 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00358 K21596 - csv:101211298 1464.9