Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00359 ATGTTTCTCGTCGATTGGTTCTACGGCGTCTTAGCATCGCTCGGCCTTTGGCAAAAAGAGGCCAAAATTCTCTTCCTCGGCCTCGATAATGCCGGCAAAACCACTCTCCTTCACATGTTGAAGGACGAGCGATTAGTGCAACACCAGCCGACTCAACACCCGACCTCAGAGGAGTTGAGTATTGGGAAAATTAAGTTCAAGGCCTTTGATCTTGGAGGCCACCAGATCGCTCGCAGAGTCTGGAAAGATTATTATGCTAAGGTGGATGCAGTAGTTTACCTGGTTGATGCTTATGACAAAGAGCGGTTTATCGAGTCGAAAAAGGAGCTCGATGCTCTCCTTTCGGATGAAGCGCTAGCTGATGTTCCTTTCCTCTTGCTCGGAAACAAGATTGACATCCCATATGCAGCATCCGAGGACGAGCTAAGATTTCACCTGGGTTTGACCAATTTCACAACTGGCAAGGGAAAGGTTAATCTTACGCAGACTAATGTTCGACCGCTCGAGGTTTTTATGTGTAGCATTGTCCGCAAGATGGGTTATGGGGATGGGTTCAAATGGCTCTCCCAATATATCAAGTAG 582 47.42 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFIESKKELDALLSDEALADVPFLLLGNKIDIPYAASEDELRFHLGLTNFTTGKGKVNLTQTNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1995344 1997784 - CmaCh17G003590.1 Cma17g00359 312254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00359 193 Gene3D - 1 193 IPR027417 -
Cma17g00359 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Cma17g00359 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Cma17g00359 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Cma17g00359 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Cma17g00359 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Cma17g00359 193 CDD Sar1 2 192 - -
Cma17g00359 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 140 IPR005225 GO:0005525
Cma17g00359 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Cma17g00359 193 SMART arf_sub_2 4 193 - -
Cma17g00359 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Cma17g00359 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Cma17g00359 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Cma17g00359 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Cma17g00359 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Cma17g00359 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00359 K07953 SAR1; GTP-binding protein SAR1 [EC:3.6.5.-] - csv:101211943 358.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01267 Cma17g00359 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00294 Cma-Chr1:1409112 Cma17g00359 Cma-Chr17:1995344 1.10E-134 dispersed
Cma12g01036 Cma-Chr12:8222306 Cma17g00359 Cma-Chr17:1995344 1.00E-130 dispersed
Cma17g00359 Cma-Chr17:1995344 Cma05g00676 Cma-Chr5:3475208 4.49E-28 dispersed
Cma14g00927 Cma-Chr14:4822109 Cma17g00359 Cma-Chr17:1995344 9.02E-134 wgd
Cma17g00359 Cma-Chr17:1995344 Cma05g01079 Cma-Chr5:8531375 3.86E-137 wgd
Cma17g00359 Cma-Chr17:1995344 Cma08g01267 Cma-Chr8:7713643 1.34E-140 wgd
Cma17g00359 Cma-Chr17:1995344 Cma08g00465 Cma-Chr8:2617306 1.91E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g91 Blo01g00053 . . Bda08g00312 . . . . Cmo08g01237 Cmo17g00350 . . . . . . . . . . . . . . Cla06g00438 Cam06g0463 Cec06g0469 Cco06g0468 Clacu06g0450 Cmu06g0451 Cre06g1227 . . . . . Csa06g01751 Chy11g01558 . Blo02g00482 Blo07g00155 Bda11g00510 Bda13g00211 Bpe05g00816 Bpe13g00688 Bma02g00924 Bma06g01476 Sed04g1758 . . Cma08g01267 Cma17g00359 Car08g01137 Car17g00332 Cpe12g00312 Cpe17g00058 Bhi12g01915 Tan06g2742 Cmetu11g0059 . . . Lcy12g0791 . . . . . . . Lsi09g01479 . . Cme11g02069
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000417 5 4 4 3 4 4 7 4 3 3 4 4 6 4 4 5 4 9 5 3 4 4 4 3 2 2 4 5 4 1 122
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00359 Cma_Chr17 FPKM 26.467154 25.321869 15.839311 18.372503 14.006166 12.312939 15.426291 19.816507 21.118101 21.170685