Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00361 ATGTGGCTCGATTTTAATGTAGAAGATGTACTTCATGAGATGGCGAAGTCGAAGAATCACACAGCGCACAATCAGTCCCGCAAAGCCCATAGGAACGGCATCAAGAAGCCAAGGAAGCATCGTCACACTTCCACCAAAGGAATGGATCCGAAGTTCCTTAGAAACCAGAGGTACGCGAAGAAACACAACAATAAGAGCGGTGAAACCGGCAGTGAGGAAGAGTAA 225 47.11 MWLDFNVEDVLHEMAKSKNHTAHNQSRKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGETGSEEE 74
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1999818 2001658 + CmaCh17G003610.1 Cma17g00361 312256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00361 74 Gene3D - 14 74 - -
Cma17g00361 74 MobiDBLite consensus disorder prediction 21 45 - -
Cma17g00361 74 Pfam Ribosomal L29e protein family 16 55 IPR002673 GO:0003735|GO:0005840|GO:0006412
Cma17g00361 74 MobiDBLite consensus disorder prediction 14 74 - -
Cma17g00361 74 MobiDBLite consensus disorder prediction 53 74 - -
Cma17g00361 74 PANTHER 60S RIBOSOMAL PROTEIN L29 14 74 - -
Cma17g00361 74 PANTHER 60S RIBOSOMAL PROTEIN L29 14 74 IPR002673 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00361 K02905 RP-L29e, RPL29; large subunit ribosomal protein L29e - csv:116404566 119.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g01268 Cma17g00361 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01268 Cma-Chr8:7716933 Cma17g00361 Cma-Chr17:1999818 1.10E-38 dispersed
Cma17g00360 Cma-Chr17:1998709 Cma17g00361 Cma-Chr17:1999818 1.77E-38 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g90 Blo01g00052 Blo12g00087 Bda03g01171 Bda08g00313 Bpe04g01109 . Bma04g01135 Bma05g01016 Cmo08g01238 Cmo17g00351 . . . . . . . . . . . . . . Cla06g00437 . . . . . . . Cone15ag0738 Cone7ag0107 Cone4ag0110 . Csa06g01750 Chy11g01560 . . . . . Bpe05g00815 . . . Sed09g0275 . . Cma08g01268 Cma17g00361 Car08g01138 Car17g00333 Cpe12g00313 Cpe17g00059 Bhi12g01917 Tan06g2743 Cmetu11g2549 . Hepe03g0595 . Lcy12g0792 . . . . . . . Lsi09g01481 . . Cme11g02071
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003097 2 2 2 2 2 0 3 0 0 2 2 0 3 2 1 2 0 3 2 0 1 2 3 0 2 2 2 3 3 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00361 Cma_Chr17 FPKM 103.855911 98.906204 100.066727 96.390015 178.398239 198.713943 181.497421 93.723801 102.388031 93.539375