Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00363 ATGGGGGCGCCAGATAGATCTCCGGCGACCTCCAATTCTATGCAGCGTGTCAAAGTTTATCGTTTAAATGATGATGGAAAATGGGATGATCAAGGAACAGGGCACGTTACTGTTGACTATTTGGAGAGATCGGAGGAGTTGGGACTATGTGTTGTTGATGAAGAGGACAATGAGACTCTTTTTCTTCACCGTATTAGCTCAGACGACATTTACAGAAAGCAAGAAGATACTATAATCTCTTGGAGAGATCCAGAATATTCTACAGAGCTAGCTCTAAGCTTCCAAGAGACAACTGGATGTTCATACATATGGGATCACATCTGCAATGTGCAAAGGAATCTCCATTTTAATTCTCTCAACAATGATACGTTCCACCGCATGAACAGTGAGTTGAGGGAATTGCCTGCAATTGAGCTATCAACACTGCCACTAATACTTAAGATTGTCGTTGAAAGTGGCATTGCAGATCAGATGCGGTTAGTGGAACTCATAGTTGCCAATCAAGATTTTTTTAAAAAGCTGATGGACATATTTCTTATCTGCGAAGACATGGAAAATCTTGATGGTCTTCACATGATATATAAAATAGTTAGAGGAATCATCCTGCTGAATAGCTCACAGATCTTCGAGAAAATTTTTGGAGACGAATTAATCATGGACATTATTGGTTCTCTAGAATACGATCCAGAGGTACCTCATGTCCAGCATCATCGTAACTTTTTGAAAGAGAACGTTATTTTCAAAGAGGCCATACCCATCAAGGATCCATCGGTCTTGTCAAAGATACATCAAACATACAGAATTGGCTATCTAAAGGATGTTGTTTTGGCTAGAGTATTGGATGAGTCCACAATTGCAAATCTAAATTCCATTATCCACGCAAACAATGCACTGGTTGTTTCGTTGTTGAAGGATGACAATACATTTATTCAGGAGTTGTTCATTACGTTGAAATTGCCAACGACCTCTGAAGAATCTAAGAAGAATTTGGTACGTTTTTTGCATGAGTTTTGCAGTTTAAGTAAAAATTTGCATATGGTTCAGCAGCTACGGCTATTTAGGGATCTTATGAATGAGGGAATTTTTGATGTCATTGCCGATGTATTACAAAGTCCAGATAAAAAGTTTGTGTTAACTGGGACAGATATCCTTATTCTTTTCTTGAACCAAGATCCAAATCTTCTACGTTCTCATGTTGTCAGGAAGGAAGGGATTCCACTCCTAGGACTGTTGGTTCAAGGCCTGATTACAGATTTTGGTGAGGAGATGCACTGTCAGTTCTTTGAAATCCTTCGATGTTTACTGGATTCCTTCACACTATCAGGAGCAACCCAGAGAGAAACTGTTGTCGAGATATTCTATGAAAATCATTTGGGTCAATTAATTGATGTTATAGCAGTTTCATGCCCTTCAGAAGGTCTTTATCGATTAAGCAACAAAGTTGGACACTCTGGTGTATTAAAGAATCAGAGCACAGTAAAGCCTGAAATTTTATCCAACATCTGTGAATTGCTTTGCTTTTGTGTTCTGCACCATCCATATAAAATAAAGTCCAACTTTCTCGTCAATAATGTCATAGATAAAGTGTTGTTACTGACTCAAAGAAGAGAAAAATATCTGGTTGTTGCAGCTGTTCGGTTTATTCGTACTATTTTATCTCGACATGATGATGATCTAATAAGTTATTTTATCAGAAATAATCTTCTAAAACCAATTATAGATGCCTTTGTTGCTAATGGGAATCGTTACAATCTGCTCAACTCAGCTGTCTTAGATTTATTTGAATACATCTTCAAGGAAAATCTGAAATCTTTGGTTAAGTATATAGTCAATTCATTTTGGAATCAGTTGGTTCAGTTCGAGTATTTGACTTCTATTCAGTCTCTAAAAGTTAAATATGAACAGTGTCTAGATGCTTTTGGTACAAGAGGCGCAACTCCGATTGTGTTAGACCCTAGAACAAGAATCGAGGAGTGTGCTTTGGAGAAAGAAGAAGAAGACTATTTTAATGAAGAGAGTGATGAAGAGGATACTGCAACTGCATCTGTTTCAAATTTACAGAAAGCACAATCTCCACCTATTCTATGTAATGGAGTTGCTGCGAATTATCCTCCGCCAAGTTCTCGACCTGGTGGTGGACTTGTTGACTATGATGATGATGAGGACGATGAAGACTACAAGCCACCGCCAAAAAAACAATCAGAAACCGTGGAGGAAGATGAAGGAGCCTTGCATACAGTCCGTTTGAAGCGTAAACCTCTTCACCAGGATAAGGATTCCGAGAAGGTGAAAACGCAGCGACCGGGAAAAAATCTAAAAATGAAAGATGGTGTATTTTCCGCCTTGTGTTCGAAATTGAGCCAAGCTGTTCTGCCTACTAATAATGCAGTGAGTTCCCAGCATTCTAAGCCACGTTCGATAGATGGGAACGAAAGTTCCAAACACGAGAGTCTGGAAGTGAAGGATCAGAATGCTTTGAGAAACTCAACTGATGGTAAAAGTAGTTTGGACGAGGAGAACCATACAGAAAAGCAACCAATCTCTTCTAAAAAGTGTTCTGATCCATTGCTTAAACCTTCAGATAGTAGTAGACAGTTGAATGGAGAAGACTGTTCATTGATTCCTCCAAACTCCTCTCCTGAAATGACTGTCAATGGATCGTAG 2664 38.85 MGAPDRSPATSNSMQRVKVYRLNDDGKWDDQGTGHVTVDYLERSEELGLCVVDEEDNETLFLHRISSDDIYRKQEDTIISWRDPEYSTELALSFQETTGCSYIWDHICNVQRNLHFNSLNNDTFHRMNSELRELPAIELSTLPLILKIVVESGIADQMRLVELIVANQDFFKKLMDIFLICEDMENLDGLHMIYKIVRGIILLNSSQIFEKIFGDELIMDIIGSLEYDPEVPHVQHHRNFLKENVIFKEAIPIKDPSVLSKIHQTYRIGYLKDVVLARVLDESTIANLNSIIHANNALVVSLLKDDNTFIQELFITLKLPTTSEESKKNLVRFLHEFCSLSKNLHMVQQLRLFRDLMNEGIFDVIADVLQSPDKKFVLTGTDILILFLNQDPNLLRSHVVRKEGIPLLGLLVQGLITDFGEEMHCQFFEILRCLLDSFTLSGATQRETVVEIFYENHLGQLIDVIAVSCPSEGLYRLSNKVGHSGVLKNQSTVKPEILSNICELLCFCVLHHPYKIKSNFLVNNVIDKVLLLTQRREKYLVVAAVRFIRTILSRHDDDLISYFIRNNLLKPIIDAFVANGNRYNLLNSAVLDLFEYIFKENLKSLVKYIVNSFWNQLVQFEYLTSIQSLKVKYEQCLDAFGTRGATPIVLDPRTRIEECALEKEEEDYFNEESDEEDTATASVSNLQKAQSPPILCNGVAANYPPPSSRPGGGLVDYDDDEDDEDYKPPPKKQSETVEEDEGALHTVRLKRKPLHQDKDSEKVKTQRPGKNLKMKDGVFSALCSKLSQAVLPTNNAVSSQHSKPRSIDGNESSKHESLEVKDQNALRNSTDGKSSLDEENHTEKQPISSKKCSDPLLKPSDSSRQLNGEDCSLIPPNSSPEMTVNGS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2011733 2022957 + CmaCh17G003630.1 Cma17g00363 312258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00363 887 MobiDBLite consensus disorder prediction 664 678 - -
Cma17g00363 887 Gene3D - 299 630 IPR011989 -
Cma17g00363 887 MobiDBLite consensus disorder prediction 792 887 - -
Cma17g00363 887 Gene3D - 10 130 IPR011993 -
Cma17g00363 887 PANTHER ATP SYNTHASE GAMMA-RELATED 1 819 - -
Cma17g00363 887 MobiDBLite consensus disorder prediction 832 848 - -
Cma17g00363 887 MobiDBLite consensus disorder prediction 725 771 - -
Cma17g00363 887 SUPERFAMILY ARM repeat 289 629 IPR016024 -
Cma17g00363 887 Pfam Phosphatase 4 regulatory subunit 3 167 356 IPR006887 -
Cma17g00363 887 PANTHER BINDING PROTEIN-RELATED 1 819 - -
Cma17g00363 887 SUPERFAMILY PH domain-like 15 111 - -
Cma17g00363 887 MobiDBLite consensus disorder prediction 664 776 - -
Cma17g00363 887 MobiDBLite consensus disorder prediction 792 806 - -
Cma17g00363 887 MobiDBLite consensus disorder prediction 807 822 - -
Cma17g00363 887 MobiDBLite consensus disorder prediction 855 887 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00363 K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3 - csv:101215140 1494.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01556 Cma17g00363 CCT
Cma14g01597 Cma17g00363 CCT
Cma08g01270 Cma17g00363 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01597 Cma-Chr14:11985587 Cma17g00363 Cma-Chr17:2011733 0 wgd
Cma17g00363 Cma-Chr17:2011733 Cma06g01556 Cma-Chr6:9732900 0 wgd
Cma17g00363 Cma-Chr17:2011733 Cma08g01270 Cma-Chr8:7720648 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g88 Blo01g00051 . . Bda08g00314 . Bpe14g01103 . Bma05g01015 Cmo08g01239 Cmo17g00353 Cma06g01556 Cma14g01597 Car06g01321 Car14g01409 . Cpe08g00157 Cpe03g01335 Bhi01g01080 . . Lac11g0927 . . Lcy11g1349 Cla06g00434 Cam06g0461 Cec06g0467 Cco06g0466 Clacu06g0448 Cmu06g0449 Cre06g1225 . . Cone7ag0106 Cone4ag0109 Lsi05g01584 Csa06g01744 Chy11g01562 Cme06g00778 Blo02g00481 . . Bda13g00212 Bpe05g00814 . Bma02g00925 . . Cmo06g01555 Cmo14g01627 Cma08g01270 Cma17g00363 Car08g01140 Car17g00336 Cpe12g00315 Cpe17g00061 Bhi12g01920 . . . . . Lcy12g0798 Cla05g00694 Cam05g0761 Cec05g0769 Cco05g0765 Clacu05g0752 Cmu05g0717 Cre05g0792 Lsi09g01483 Csa03g01510 Chy06g00746 Cme11g02073
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001634 1 6 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 4 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma17g00363 Cma_Chr17 FPKM 16.497797 15.794264 19.303738 18.471514 21.424229 19.659374 21.922115 21.096916 19.789423 22.360062