Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma17g00369 | ATGGGAACTCCACCAGTAGAGGAGCTTCTGAGGAAGATACAAGAGCTGGAGGAAGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCGGATTCCAATTCAGACCACCAAGTTCGCCACCATCATCATCATCATCACCATCAGCGCTCTCAATCGATATCGCCTCAGCGTTCTAGGTTTGCTACGGCTCAGAGAAGAGGCGGCGCTGCTGGAGGTTTCGACGGCGCTGCAGCGGCGTGGAAGAGAGGCTCTTCGTCGTTTCGATATTCTTCTCCACTTCAGAGAGAGAGTAGGACTTGTGAGCCTTTAAATGCCGCCGCCAGTGTCGGAACCGACGGCGGCTCTGGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAATTATCGCATAATTTATTGGAACCGAGCTGCTGAAAGTGTGTATGGATATTCTGCGGTGGAGGCTCTTGGTCAGGACGCCATTGAGCTTCTAGTCGATCCTGAGGACTTCGCCGTTGCGAATGATGTAACTCTTCGTGTCATGGGTGGGGAGAATTGGACTGGTCAATTACCTGTAAAGAACAAGATGGGGCAAAAATTTATGGTTGTTGCCACTAACACTCCATTCTATGACGATGGTGCATTGGTTGGGATTATCTGTGTATCAAGTGATTCACGGCCATTTCAAGAATTGAAGATTCTTTTAGCATCAGGTTCTAAACAGCAGGATGCAGATTCGAACACGATCTGTTCAAGAATCCCGGTTTCAGCTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTTGCAATTGCTTCAAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGTTTGGATCGTGAAGGTGGAAGTGCAGATAGTTACCACTCTGATCATGGCTTTCCAGATGCAGTTCTTCGTGACCATCGGGAGGATGCAAATTCAAGTGGAGCTAGCACGCCTCGGGGCGATTCCACGGCTCATGGTGCGTTGTCCCAGGTTGAGGAGAAGTTGTCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTGCAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAAGCAGAAGAGTGGATCACTAAGAAAGGCATATCTTGGCCATGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAGAACAACCCGTATTGTTTGGCCCTGGGTACAAATTGATCAAGAAACTGAACCAGCAAATCATAAAAGTTCTTCTTCATCTGTGAAACCAGAAATGCAGCAAAACGATGGTCATCGAGCAGTCAATAATGAGGCGTCGGGATCTTGGTCATCATTCAATTTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTGCCAGTAGTAGTGCTATCAACAAGGTTGACACGGACTTTGACTGCTTGGATTATGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCGGACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAACATTCTTCTCTTCATGGGAGTTGTGACTTCACCTCAGCGTCTCTGTATTGTCACAGAATTTCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACGGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACGTTGCGAGAGGCATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGGGATTTGAAATCTTCGAACCTCTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACGACTAAGACGGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCTGACATATACAGTTTCGGAGTCATATTGTGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATACAATGCAGGTGATTGGTGCTGTTGGGTTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCACAGTGGGCTTCTATTATTGAAAGCTGCTGGCACAGTGAACCCGCAAACCGGCCATCATTCCAGGTTCTGATGGAAAGGCTTAGAGAACTGCATAGAAAGTTTACTATTCAATTACAAGCAGCCCGTAACGGTGGAGATAATATCAGTCAAAAGGAAACATAA | 2358 | 46.27 | MGTPPVEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQVRHHHHHHHHQRSQSISPQRSRFATAQRRGGAAGGFDGAAAAWKRGSSSFRYSSPLQRESRTCEPLNAAASVGTDGGSGPAAVNFTNKQYLNILQSMGQSVHIFDLNYRIIYWNRAAESVYGYSAVEALGQDAIELLVDPEDFAVANDVTLRVMGGENWTGQLPVKNKMGQKFMVVATNTPFYDDGALVGIICVSSDSRPFQELKILLASGSKQQDADSNTICSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSADSYHSDHGFPDAVLRDHREDANSSGASTPRGDSTAHGALSQVEEKLSGKLVRDSGDEVAGKPTIQKILSSKAEEWITKKGISWPWKGTEQEGGSETRTTRIVWPWVQIDQETEPANHKSSSSSVKPEMQQNDGHRAVNNEASGSWSSFNFNSTSSVSSCGSASSSAINKVDTDFDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFGQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDVARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNTMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWHSEPANRPSFQVLMERLRELHRKFTIQLQAARNGGDNISQKET | 785 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 2061563 | 2066944 | + | CmaCh17G003690.1 | Cma17g00369 | 312264 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma17g00369 | 785 | MobiDBLite | consensus disorder prediction | 45 | 59 | - | - | |
Cma17g00369 | 785 | MobiDBLite | consensus disorder prediction | 433 | 459 | - | - | |
Cma17g00369 | 785 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 39 | 783 | - | - | |
Cma17g00369 | 785 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 134 | 241 | IPR035965 | - | |
Cma17g00369 | 785 | Gene3D | Transferase(Phosphotransferase) domain 1 | 585 | 784 | - | - | |
Cma17g00369 | 785 | MobiDBLite | consensus disorder prediction | 35 | 82 | - | - | |
Cma17g00369 | 785 | CDD | STKc_MAP3K-like | 513 | 759 | - | - | |
Cma17g00369 | 785 | TIGRFAM | sensory_box: PAS domain S-box protein | 132 | 241 | IPR000014 | - | |
Cma17g00369 | 785 | MobiDBLite | consensus disorder prediction | 429 | 459 | - | - | |
Cma17g00369 | 785 | ProSiteProfiles | Protein kinase domain profile. | 507 | 766 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma17g00369 | 785 | Pfam | PAS fold | 133 | 238 | IPR013767 | GO:0006355 | |
Cma17g00369 | 785 | Pfam | Protein tyrosine and serine/threonine kinase | 507 | 759 | IPR001245 | GO:0004672|GO:0006468 | |
Cma17g00369 | 785 | Gene3D | PAS domain | 142 | 244 | - | - | |
Cma17g00369 | 785 | PANTHER | SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED | 39 | 783 | - | - | |
Cma17g00369 | 785 | SMART | serkin_6 | 507 | 766 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma17g00369 | 785 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 626 | 638 | IPR008271 | GO:0004672|GO:0006468 | |
Cma17g00369 | 785 | SUPERFAMILY | Protein kinase-like (PK-like) | 488 | 758 | IPR011009 | - | |
Cma17g00369 | 785 | Coils | Coil | 6 | 26 | - | - | |
Cma17g00369 | 785 | MobiDBLite | consensus disorder prediction | 304 | 332 | - | - | |
Cma17g00369 | 785 | Gene3D | Phosphorylase Kinase; domain 1 | 500 | 584 | - | - | |
Cma17g00369 | 785 | SMART | pas_2 | 132 | 199 | IPR000014 | - | |
Cma17g00369 | 785 | ProSiteProfiles | PAS repeat profile. | 130 | 201 | IPR000014 | - | |
Cma17g00369 | 785 | CDD | PAS | 141 | 241 | IPR000014 | - | |
Cma17g00369 | 785 | PRINTS | Tyrosine kinase catalytic domain signature | 581 | 594 | IPR001245 | GO:0004672|GO:0006468 | |
Cma17g00369 | 785 | PRINTS | Tyrosine kinase catalytic domain signature | 620 | 638 | IPR001245 | GO:0004672|GO:0006468 | |
Cma17g00369 | 785 | PRINTS | Tyrosine kinase catalytic domain signature | 667 | 677 | IPR001245 | GO:0004672|GO:0006468 | |
Cma17g00369 | 785 | PRINTS | Tyrosine kinase catalytic domain signature | 686 | 708 | IPR001245 | GO:0004672|GO:0006468 | |
Cma17g00369 | 785 | PRINTS | Tyrosine kinase catalytic domain signature | 730 | 752 | IPR001245 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g01276 | Cma17g00369 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma17g00369 | Cma-Chr17:2061563 | Cma18g00067 | Cma-Chr18:280844 | 9.75E-107 | dispersed | |
Cma17g00369 | Cma-Chr17:2061563 | Cma08g01276 | Cma-Chr8:7757374 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69226 | PF07714 | PK_Tyr_Ser-Thr | 1.40E-68 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma17g00369 | - | - | bhj:120067055 | 1346.64 |