Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00369 ATGGGAACTCCACCAGTAGAGGAGCTTCTGAGGAAGATACAAGAGCTGGAGGAAGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCGGATTCCAATTCAGACCACCAAGTTCGCCACCATCATCATCATCATCACCATCAGCGCTCTCAATCGATATCGCCTCAGCGTTCTAGGTTTGCTACGGCTCAGAGAAGAGGCGGCGCTGCTGGAGGTTTCGACGGCGCTGCAGCGGCGTGGAAGAGAGGCTCTTCGTCGTTTCGATATTCTTCTCCACTTCAGAGAGAGAGTAGGACTTGTGAGCCTTTAAATGCCGCCGCCAGTGTCGGAACCGACGGCGGCTCTGGCCCCGCCGCCGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAATTATCGCATAATTTATTGGAACCGAGCTGCTGAAAGTGTGTATGGATATTCTGCGGTGGAGGCTCTTGGTCAGGACGCCATTGAGCTTCTAGTCGATCCTGAGGACTTCGCCGTTGCGAATGATGTAACTCTTCGTGTCATGGGTGGGGAGAATTGGACTGGTCAATTACCTGTAAAGAACAAGATGGGGCAAAAATTTATGGTTGTTGCCACTAACACTCCATTCTATGACGATGGTGCATTGGTTGGGATTATCTGTGTATCAAGTGATTCACGGCCATTTCAAGAATTGAAGATTCTTTTAGCATCAGGTTCTAAACAGCAGGATGCAGATTCGAACACGATCTGTTCAAGAATCCCGGTTTCAGCTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTTGCAATTGCTTCAAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGTTTGGATCGTGAAGGTGGAAGTGCAGATAGTTACCACTCTGATCATGGCTTTCCAGATGCAGTTCTTCGTGACCATCGGGAGGATGCAAATTCAAGTGGAGCTAGCACGCCTCGGGGCGATTCCACGGCTCATGGTGCGTTGTCCCAGGTTGAGGAGAAGTTGTCTGGCAAACTGGTCAGGGATTCTGGTGATGAGGTTGCAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAAGCAGAAGAGTGGATCACTAAGAAAGGCATATCTTGGCCATGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAACAAGAACAACCCGTATTGTTTGGCCCTGGGTACAAATTGATCAAGAAACTGAACCAGCAAATCATAAAAGTTCTTCTTCATCTGTGAAACCAGAAATGCAGCAAAACGATGGTCATCGAGCAGTCAATAATGAGGCGTCGGGATCTTGGTCATCATTCAATTTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTGCCAGTAGTAGTGCTATCAACAAGGTTGACACGGACTTTGACTGCTTGGATTATGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCGGACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAACATTCTTCTCTTCATGGGAGTTGTGACTTCACCTCAGCGTCTCTGTATTGTCACAGAATTTCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACGGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACGTTGCGAGAGGCATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGGGATTTGAAATCTTCGAACCTCTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACGACTAAGACGGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGTAATGAGCCCTCGGATGAGAAGTCTGACATATACAGTTTCGGAGTCATATTGTGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATACAATGCAGGTGATTGGTGCTGTTGGGTTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCACAGTGGGCTTCTATTATTGAAAGCTGCTGGCACAGTGAACCCGCAAACCGGCCATCATTCCAGGTTCTGATGGAAAGGCTTAGAGAACTGCATAGAAAGTTTACTATTCAATTACAAGCAGCCCGTAACGGTGGAGATAATATCAGTCAAAAGGAAACATAA 2358 46.27 MGTPPVEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQVRHHHHHHHHQRSQSISPQRSRFATAQRRGGAAGGFDGAAAAWKRGSSSFRYSSPLQRESRTCEPLNAAASVGTDGGSGPAAVNFTNKQYLNILQSMGQSVHIFDLNYRIIYWNRAAESVYGYSAVEALGQDAIELLVDPEDFAVANDVTLRVMGGENWTGQLPVKNKMGQKFMVVATNTPFYDDGALVGIICVSSDSRPFQELKILLASGSKQQDADSNTICSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSADSYHSDHGFPDAVLRDHREDANSSGASTPRGDSTAHGALSQVEEKLSGKLVRDSGDEVAGKPTIQKILSSKAEEWITKKGISWPWKGTEQEGGSETRTTRIVWPWVQIDQETEPANHKSSSSSVKPEMQQNDGHRAVNNEASGSWSSFNFNSTSSVSSCGSASSSAINKVDTDFDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFGQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDVARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNTMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWHSEPANRPSFQVLMERLRELHRKFTIQLQAARNGGDNISQKET 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2061563 2066944 + CmaCh17G003690.1 Cma17g00369 312264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00369 785 MobiDBLite consensus disorder prediction 45 59 - -
Cma17g00369 785 MobiDBLite consensus disorder prediction 433 459 - -
Cma17g00369 785 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 39 783 - -
Cma17g00369 785 SUPERFAMILY PYP-like sensor domain (PAS domain) 134 241 IPR035965 -
Cma17g00369 785 Gene3D Transferase(Phosphotransferase) domain 1 585 784 - -
Cma17g00369 785 MobiDBLite consensus disorder prediction 35 82 - -
Cma17g00369 785 CDD STKc_MAP3K-like 513 759 - -
Cma17g00369 785 TIGRFAM sensory_box: PAS domain S-box protein 132 241 IPR000014 -
Cma17g00369 785 MobiDBLite consensus disorder prediction 429 459 - -
Cma17g00369 785 ProSiteProfiles Protein kinase domain profile. 507 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00369 785 Pfam PAS fold 133 238 IPR013767 GO:0006355
Cma17g00369 785 Pfam Protein tyrosine and serine/threonine kinase 507 759 IPR001245 GO:0004672|GO:0006468
Cma17g00369 785 Gene3D PAS domain 142 244 - -
Cma17g00369 785 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 39 783 - -
Cma17g00369 785 SMART serkin_6 507 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma17g00369 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Cma17g00369 785 SUPERFAMILY Protein kinase-like (PK-like) 488 758 IPR011009 -
Cma17g00369 785 Coils Coil 6 26 - -
Cma17g00369 785 MobiDBLite consensus disorder prediction 304 332 - -
Cma17g00369 785 Gene3D Phosphorylase Kinase; domain 1 500 584 - -
Cma17g00369 785 SMART pas_2 132 199 IPR000014 -
Cma17g00369 785 ProSiteProfiles PAS repeat profile. 130 201 IPR000014 -
Cma17g00369 785 CDD PAS 141 241 IPR000014 -
Cma17g00369 785 PRINTS Tyrosine kinase catalytic domain signature 581 594 IPR001245 GO:0004672|GO:0006468
Cma17g00369 785 PRINTS Tyrosine kinase catalytic domain signature 620 638 IPR001245 GO:0004672|GO:0006468
Cma17g00369 785 PRINTS Tyrosine kinase catalytic domain signature 667 677 IPR001245 GO:0004672|GO:0006468
Cma17g00369 785 PRINTS Tyrosine kinase catalytic domain signature 686 708 IPR001245 GO:0004672|GO:0006468
Cma17g00369 785 PRINTS Tyrosine kinase catalytic domain signature 730 752 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01276 Cma17g00369 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00369 Cma-Chr17:2061563 Cma18g00067 Cma-Chr18:280844 9.75E-107 dispersed
Cma17g00369 Cma-Chr17:2061563 Cma08g01276 Cma-Chr8:7757374 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69226 PF07714 PK_Tyr_Ser-Thr 1.40E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00369 - - bhj:120067055 1346.64