Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma17g00372 ATGCTCCGGGGATTGATGAATCTTCTCTCCCTTTGCTGGAAGCCGTTCGGGCATGCTACTGAGAATTTGAGCTCTGTTGGAGTAATTGGAACCACTTGTGGTGGTAAAGATACTAAGGATAGCTTGCTCTGGTTCTATGATTATGGTAAGTATGCTTCCGGCGAATTTTCCATGGCTGTCGTACAGGCCAACCAAGTGCTTGAAGACCAGAGCCAGATTGAATCTGGTCCTTTTGGCACTTTCGTCGGAATCTACGATGGCCATGGCGGCCCCGATGCTGCTCGATATGTCTGCGATAATTTGTTTAGGCGTTTCCAAGATGAAGAACGAGGAGTTGTTACTCGTGAATCCATTCTGAATGCTTTTCGTCAAACAGAGGAGGGGTTCACAGCCGTTGTGTCAGACTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACGTGCTGTCTAGTAGGGGTGATACATGAGCAGACACTCTACATTGCAAGTCTAGGAGATTCTCGTGCCGTGTTAGGGAAGAAAGTTGGCAACACAGGGGAGATTGCTGCCATTCAGTTATCAACAGAGCATAATGCAAATCTTGAGGATATCAGGCAAGAATTAAGAGACATGCATCCCAATGATCCTCAAATTGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGCGATGTGTATATGAAACATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGGCTTCCGGAACCAATAAATAAGCCTATATTGACTGCTGAACCTACGATTTTTGCTCATCCTCTTCACCAAAACGATTCGTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAGAAAGCTGTGGACATTGTCCATAATCATCCACGTGCGGGAAGCGCGAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTAGAAAGCGAGAGATGCGATATTCAGATCTCCGAAAGATCGATAAGAAGGTTCGGCGTCATTTTCACGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGACCTCATATCCAGAAGCAATGTCCTCCTAGATCAGCCATTATCAGTAAGAAGTGCTCTTGATCATTGA 1134 44.36 MLRGLMNLLSLCWKPFGHATENLSSVGVIGTTCGGKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEERGVVTRESILNAFRQTEEGFTAVVSDLWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEDIRQELRDMHPNDPQIVVQRHGVWRVKGIIQVSRSIGDVYMKHAQYNNERINAKFRLPEPINKPILTAEPTIFAHPLHQNDSFLIFASDGLWEHLTNEKAVDIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSALDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2077279 2081605 + CmaCh17G003720.1 Cma17g00372 312267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma17g00372 377 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Cma17g00372 377 PANTHER ALPHABET, ISOFORM E-RELATED 3 377 - -
Cma17g00372 377 CDD PP2Cc 56 353 IPR001932 -
Cma17g00372 377 Pfam Protein phosphatase 2C 80 323 IPR001932 -
Cma17g00372 377 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 3 377 - -
Cma17g00372 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cma17g00372 377 Gene3D - 47 362 IPR036457 -
Cma17g00372 377 SMART PP2C_4 49 351 IPR001932 -
Cma17g00372 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g01281 Cma17g00372 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00372 Cma-Chr17:2077279 Cma02g00269 Cma-Chr2:1227050 1.43E-158 dispersed
Cma17g00372 Cma-Chr17:2077279 Cma08g01281 Cma-Chr8:7769430 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma17g00372 K01102 - csv:101207284 709.523